| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,387,796 – 12,387,891 |
| Length | 95 |
| Max. P | 0.910935 |
| Location | 12,387,796 – 12,387,891 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.45 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -9.64 |
| Energy contribution | -10.57 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.910935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12387796 95 - 22224390 -AACAAAAAAAAAAUAACAUUGACAGUGCGAUCGAUAAAA--GUAUCGAUAAUAUCGAUAAUUUUAGA-AAUUAACAAGCACUGAUGUUGGGAUUUCUU--------------------- -.............((((((...((((((.(((((((...--.)))))))......(.(((((.....-))))).)..)))))))))))).........--------------------- ( -19.20) >DroSec_CAF1 1809 92 - 1 -AACAAAA---AUUUAGCUUUGACAAUGCGAUCGAUAAAA--AUAUCGAUAAUAUCGAUAAUUUUAGA-UUUCAGCAAUCACCGAUGCUGGAAUUAAUA--------------------- -.......---.....((.........))......(((((--.(((((((...))))))).)))))((-((((((((........))))))))))....--------------------- ( -19.30) >DroSim_CAF1 19565 82 - 1 -AA---------AGUAGCAUCGACAAUGCGAUCGAUAAAAGCAUCUCGAUAUUAUCGAU------AGA-UUUCAGCAAGCACCGAUGCUGGGAUUACUU--------------------- -.(---------(((.((((.....)))).((((((((...(.....)...))))))))------.((-(..(((((........)))))..)))))))--------------------- ( -20.80) >DroEre_CAF1 1841 115 - 1 CAACAAGC---GAGUAGCAUUGACAAUCCGAUCGAUUAAA--GUAUCGAUAAUAUCGAUAAUUUUAGAAUUUUAGCAAGCACCGAGGGUGGAAUUAUCUUGAUAAAUACUAAAUACAGAG ......((---.....))(((((.......((((((....--..))))))....)))))...(((((.((((...((((((((...)))).......))))..)))).)))))....... ( -17.51) >consensus _AACAAAA___AAGUAGCAUUGACAAUGCGAUCGAUAAAA__AUAUCGAUAAUAUCGAUAAUUUUAGA_UUUCAGCAAGCACCGAUGCUGGAAUUACUU_____________________ ..................(((((.......(((((((......)))))))....)))))..........((((((((........))))))))........................... ( -9.64 = -10.57 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:39 2006