| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,385,784 – 12,385,894 |
| Length | 110 |
| Max. P | 0.894200 |
| Location | 12,385,784 – 12,385,894 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.92 |
| Mean single sequence MFE | -29.03 |
| Consensus MFE | -21.96 |
| Energy contribution | -21.63 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12385784 110 - 22224390 A--------UCG-AAGUUCAAGGCUGACGAUCCAUGCCGAAGUUCUGUGGAACUUAAUUGGGUUUU-CAUCUUGAUUAUUCUUCUUUGAUUUUGAAGUCAAAUAAUUUAUAACUAACUAU .--------..(-(((.((((((.(((.((((((.....((((((....))))))...)))))).)-)))))))).....))))(((((((....))))))).................. ( -27.60) >DroSim_CAF1 17584 107 - 1 ---------UCAAGAGUUCAAGGCUGACGAUCCAUGCCGAAGUUCUGUGGAACUUAAUUGGGUUUU-CACCUUGAUUAUUCUUCUUUGAUUUUGAAGUCAAAUAAUUUAU---UAACUAU ---------..((((((((((((.(((.((((((.....((((((....))))))...)))))).)-))))))))..)))))).(((((((....)))))))........---....... ( -30.10) >DroYak_CAF1 5043 117 - 1 AUGGAUGGUUCCAGAGUUCAGGGCUGAUGAUCCAUGCCGAAAUUCUGUGGAACUUAAUUGGGUUUUGCACCUUGAUUAUUCUUCUUUGAUUUUGAAAUCAAAGAGUAUAU---UAACUAU .((((....))))((((((((((.((..((((((.....((.(((....))).))...))))))...))))))))..))))((((((((((....)))))))))).....---....... ( -29.40) >consensus A________UCAAGAGUUCAAGGCUGACGAUCCAUGCCGAAGUUCUGUGGAACUUAAUUGGGUUUU_CACCUUGAUUAUUCUUCUUUGAUUUUGAAGUCAAAUAAUUUAU___UAACUAU ..............(((((((((.((..((((((.....((((((....))))))...))))))...)))))))).........(((((((....))))))).............))).. (-21.96 = -21.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:37 2006