Locus 4761

Sequence ID X_DroMel_CAF1
Location 12,384,944 – 12,385,036
Length 92
Max. P 0.994491
window7800

overview

Window 0

Location 12,384,944 – 12,385,036
Length 92
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 70.93
Mean single sequence MFE -21.82
Consensus MFE -14.36
Energy contribution -14.68
Covariance contribution 0.32
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.66
SVM decision value 2.48
SVM RNA-class probability 0.994491
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12384944 92 - 22224390
-CACAGUUAGCCG--------------CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU-UGUCCAC--AGU-CCAUCCUGCUCCA------ACUCCU---
-...(((((((.(--------------.((.((.(((((((((..(........)..)))))))))))((((((....-.....))--)))-)..))).)))..)------)))...--- ( -23.40)
>DroPse_CAF1 719 102 - 1
-CACAGUUAGCUA--------------CGACACUCGCUAAUGCCGUCUCAUUAUGUUUCAUUAGCGCUGACUGUACCUCUGUACCCCCACUUCAGUUCAGUUCGUUCCUCAUCUACA---
-.(((((((((..--------------.(.....)(((((((.(((......)))...))))))))))))))))....(((.((..........)).))).................--- ( -20.40)
>DroSim_CAF1 16767 92 - 1
-CACAGUUAGCCG--------------CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU-UGUCCAC--AGU-CCAUCCUGCUCCA------UCUCCU---
-.......(((.(--------------.((.((.(((((((((..(........)..)))))))))))((((((....-.....))--)))-)..))).)))...------......--- ( -21.90)
>DroWil_CAF1 29032 108 - 1
ACACUUUUAGCUGGACGACGACGACGACGACACUCGCUAAUGGUCCAUCAUUAAGUUUCAUUAGCAGAGACUGUACAC-CAG--AC--ACU-CUCUUUUUCUCCA------UACCCUUUC
...........((((.((.................((((((((..(........)..))))))))(((((.(((....-...--))--).)-))))...))))))------......... ( -21.00)
>DroYak_CAF1 4178 100 - 1
-CACAGUUAGCCG--------------CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU-UGUCCACCUUGU-CCAUCCUGUUCCAUCGCCAUCUCCA---
-...........(--------------(((.....((((((((..(........)..))))))))((((((.......-.)).))))....-.............))))........--- ( -22.40)
>consensus
_CACAGUUAGCCG______________CGACACUCGCUAAUGGCUCCUCAUUAUGUUCCAUUAGCGGUGACUGUACCU_UGUCCAC__AGU_CCAUCCUGCUCCA______UCUCCU___
..(((((((.((................(.....)((((((((..(........)..))))))))))))))))).............................................. (-14.36 = -14.68 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:36 2006