| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,380,361 – 12,380,473 |
| Length | 112 |
| Max. P | 0.953950 |
| Location | 12,380,361 – 12,380,473 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -16.77 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.953950 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12380361 112 - 22224390 AUUAAUAAUAAUAAGAGGGCAAACACAAACACAAACAA-ACAUGUGCGCAAGUCAACGUCGUAACAUUGCGAAAUUGAUUUUUCAUCUGCUAGCGGUACUUUCCGCUCUCACC------- ..............(((((((........((((.....-...))))...(((((((..(((((....)))))..)))))))......))))(((((......))))))))...------- ( -26.20) >DroSim_CAF1 11818 112 - 1 AUUAAUAAUAAUAAGAGGGCAAACACAAACACAAACAA-ACAUGUGCGCAAGUCAACGUCGUAACAUUGCGAAAUUGAUUUUUCAUCUGCUAGCGGUACUUUCCGCUCUCCCC------- ..............(((((((........((((.....-...))))...(((((((..(((((....)))))..)))))))......))))(((((......))))))))...------- ( -25.30) >DroWil_CAF1 22733 115 - 1 AUCAACGAAAUGAUGAAAGCAAACACAAACACAAACAAAACAAGUGCGCAUGUU---GUUGUAAUAUUGCGAAAUUGAUUUUUCCCUCGCUAGC--UUCCUUCAGCUUUCUCUUCACUUC ......(((.(((.((((((..........((((....((((.(....).))))---.))))......((((....((....))..))))....--........))))))...))).))) ( -18.90) >consensus AUUAAUAAUAAUAAGAGGGCAAACACAAACACAAACAA_ACAUGUGCGCAAGUCAACGUCGUAACAUUGCGAAAUUGAUUUUUCAUCUGCUAGCGGUACUUUCCGCUCUCACC_______ ..............((((((.........(((...........)))((((((((((..(((((....)))))..)))))))...........))).........)))))).......... (-16.77 = -17.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:34 2006