| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,369,269 – 12,369,360 |
| Length | 91 |
| Max. P | 0.941699 |
| Location | 12,369,269 – 12,369,360 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.46 |
| Mean single sequence MFE | -17.60 |
| Consensus MFE | -13.50 |
| Energy contribution | -13.67 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12369269 91 - 22224390 -----CAAAUAUUCGCAAAUAAAGUGGCGAUUGGAUAUUACAACUUUCCGGUCACUGCAUUUCUGCAAAGUUCACAAA---------ACUACAGC----------ACUCGACGGU -----.......((((.......(..(.(((((((...........))))))).)..).....(((..((((.....)---------)))...))----------)...).))). ( -16.20) >DroVir_CAF1 5942 82 - 1 ---------GGCUUGCAAAUAAAGUGCCGAUUGGAUAUUACAACUUUCCGGUCACUGCAUUUCUGCAAAGUUCACAAA---------ACUACAAA----------UACC---A-- ---------((.(((((....((((((.(((((((...........)))))))...)))))).)))))((((.....)---------))).....----------..))---.-- ( -17.40) >DroPse_CAF1 8983 102 - 1 GUCC-GAAAUAUUCGCAAAUAAAGUGGCGAUUGGAUAUUACAACUUUCCGGUCACUGCAUUUCUGCAAAGUUCACAAA---------ACUACACCCCCCCCCUCCACUU---GCC ...(-((.....)))......((((((.(((((((...........)))))))..((((....))))...........---------................))))))---... ( -17.80) >DroGri_CAF1 6373 83 - 1 ---------AGCUCGCAAAUAAAGUGGCGAUUGGAUAUUACAACUUUCCGGUCAAUGCAUUUCUGCAAAGUUCACAAC--------AACUACAAC----------AACU---U-- ---------.((.(((.......)))))(((((((...........)))))))..((((....)))).((((......--------)))).....----------....---.-- ( -15.50) >DroMoj_CAF1 7351 97 - 1 CUCUGC---AGUUCGCAAAUAAAGUGGCGAUUGGAUAUUACAACUUUCCGGUCACUGCAUUUCUGCAAAGUUCACAAAAAAAAAAGAACUACAAA----------UGCA---A-- ...(((---(....(((...((.(..(.(((((((...........))))))).)..).))..)))..(((((............))))).....----------))))---.-- ( -21.90) >DroAna_CAF1 8874 80 - 1 -----AGGAUGUUCGCAAAUAAAGUGGCGAUUGGAUAUUACAACUUUCCGGUCACUGCAUUUCUGCAAAGUUCACAAA---------ACUACAA--------------------- -----.((((....(((...((.(..(.(((((((...........))))))).)..).))..)))...)))).....---------.......--------------------- ( -16.80) >consensus _________UGUUCGCAAAUAAAGUGGCGAUUGGAUAUUACAACUUUCCGGUCACUGCAUUUCUGCAAAGUUCACAAA_________ACUACAAC__________AACC___A__ .......................((((((((((((...........)))))))..((((....))))..).))))........................................ (-13.50 = -13.67 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:33 2006