Locus 4757

Sequence ID X_DroMel_CAF1
Location 12,365,894 – 12,365,991
Length 97
Max. P 0.586748
window7795

overview

Window 5

Location 12,365,894 – 12,365,991
Length 97
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 84.19
Mean single sequence MFE -31.57
Consensus MFE -21.47
Energy contribution -22.80
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.68
SVM decision value 0.11
SVM RNA-class probability 0.586748
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12365894 97 - 22224390
----------CCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUGUGGGUGGGUGUGGGUGGGUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU
----------((((..(((....(((.((((((...))).)))...)))....)))..))...))(..((.((((((..(((.....)))..))))))))..).... ( -31.40)
>DroSec_CAF1 9291 96 - 1
CCCAAACAUCCCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUG--GCUGGU---------UUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU
.(((..((((((((..(......(((......))).....)..))).)))))--..))).---------..((((((..(((.....)))..))))))......... ( -31.70)
>DroSim_CAF1 2387 96 - 1
CCCAAACAUCCCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUG--GAUGGU---------UUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU
.(((..((((((((..(......(((......))).....)..))).)))))--..))).---------..((((((..(((.....)))..))))))......... ( -31.60)
>consensus
CCCAAACAUCCCUUUGCCCUUUGCCAACACGAUGGAAUCAGUGGAGUGGGUG__GAUGGU_________UUGUGCAGUUUGCGUUUUGCAUUUUGCACUCUGCAUUU
......((((((((..(......(((......))).....)..))).)))))...................((((((..(((.....)))..))))))......... (-21.47 = -22.80 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:32 2006