Locus 4755

Sequence ID X_DroMel_CAF1
Location 12,359,517 – 12,359,614
Length 97
Max. P 0.837799
window7793

overview

Window 3

Location 12,359,517 – 12,359,614
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 80.41
Mean single sequence MFE -29.60
Consensus MFE -20.95
Energy contribution -23.84
Covariance contribution 2.89
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.71
SVM decision value 0.74
SVM RNA-class probability 0.837799
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12359517 97 + 22224390
UCAUAUGUUGCUAACGGAAAUUGAUGUUUGGCCUUUGGCGGAGACAACUCUGGCGCAGGGUUGUCAUUGUUCUGCAUGUGGAGACAAAUGCAGAUGC
.......(((((((.((..(........)..)).))))))).((((((((((...)))))))))).....(((((((.((....)).)))))))... ( -35.30)
>DroSim_CAF1 5387 97 + 1
UGCUAUGUUGCUAACGGAAAUUGAUGUUUGGCCCUUGGCGGAGACAACUCUGGCGCAGGGUUGUCAUUGUUCUGCAUGUGGAGACAAGUCUUAAAAU
.(((.(((..(((.(((((..((((....((((((((.(((((....))))).)).))))))))))...)))))....)))..))))))........ ( -28.70)
>DroYak_CAF1 7228 83 + 1
UGAUAUGUUGCUAGCGGAAAUUGA--------------CGGAGACAACUCUGGUGCAGGGUUGUCAUUGUUCUGCAUGCGAAGACAAGUGCAGAUGC
.......((((..((((((..(((--------------((....)(((((((...)))))))))))...))))))..))))................ ( -24.80)
>consensus
UGAUAUGUUGCUAACGGAAAUUGAUGUUUGGCC_UUGGCGGAGACAACUCUGGCGCAGGGUUGUCAUUGUUCUGCAUGUGGAGACAAGUGCAGAUGC
.......(((((((.((..............)).))))))).((((((((((...)))))))))).....(((((((.((....)).)))))))... (-20.95 = -23.84 +   2.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:30 2006