Locus 4753

Sequence ID X_DroMel_CAF1
Location 12,355,809 – 12,355,909
Length 100
Max. P 0.589806
window7791

overview

Window 1

Location 12,355,809 – 12,355,909
Length 100
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 66.84
Mean single sequence MFE -35.93
Consensus MFE -22.43
Energy contribution -22.43
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -1.06
Structure conservation index 0.62
SVM decision value 0.11
SVM RNA-class probability 0.589806
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12355809 100 + 22224390
CGCCCAAC-----GUGGCUUCAUUUGAACGUAUUGACUUACCUGGUUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUAAGCAGUUCGCCCUCGCCGGCGUCG
((((....-----..(((((((...(((((((......)))...))))..----...)))----))))((------(((.(((((((.((......)).))))))).)))))))))... ( -40.00)
>DroSec_CAF1 2888 83 + 1
-------------GUG----CAUUUGA-----UUGACCUACCUGGAUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUGAGCAGUUCGCCCUCGCCGGCGUCG
-------------...----.......-----..(((...(((((....)----))..))----.(((((------(((.(((((((.((......)).))))))).))))))))))). ( -34.80)
>DroSim_CAF1 2881 87 + 1
-------------GUGGCUUCAUUUGA-----UUAACCUACCUGGAUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUGAGCAGUUCGCCCUCGCCGGCGUCG
-------------..(((.........-----....((....(((....)----))..))----.(((((------(((.(((((((.((......)).))))))).))))))))))). ( -34.90)
>DroEre_CAF1 2930 94 + 1
-------------GUG----CACUUGAAGAGAUCGACUCACCUGGAGCUC----CGCUGG----AGCUGGUGGCGGUGGCGGUGGACAGCACUUGAGCAGCUCGCCCUCGCCGGCGUCG
-------------...----.............(((((((((...(((((----(...))----)))))))))((((((.((((..(.((......)).)..)))).))))))..)))) ( -35.70)
>DroYak_CAF1 2933 84 + 1
---------------G----AACUAGAG--GAUUGACUCACCUGGAUCUC----CGCUGG----AGCCGG------UGGCGGUGGACAGCACUUGAGUAGUUCGCCCUCGCCGGCGUCG
---------------.----..((((.(--((..((..(....)..))))----).))))----.(((((------(((.(((((((.((......)).))))))).)))))))).... ( -37.10)
>DroPer_CAF1 3203 113 + 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCGGGGCGUUGGCGCUCGCAGG------AGGCGGGGGACAGCACUUGAGCAAUUCCCCCUCGCCGGCGUCG
....................................................(((((((((((((....)------))..((((((..((......))...)))))).)))))))))). ( -33.10)
>consensus
_____________GUG____CAUUUGA_____UUGACUUACCUGGAUCUC____CGCUGG____AGCCGG______UGGCGGUGGACAGCACUUGAGCAGUUCGCCCUCGCCGGCGUCG
......................................................((((((.....((((.......))))(((((((.((......)).)))))))....))))))... (-22.43 = -22.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:28 2006