Locus 4749

Sequence ID X_DroMel_CAF1
Location 12,339,097 – 12,339,195
Length 98
Max. P 0.606904
window7786

overview

Window 6

Location 12,339,097 – 12,339,195
Length 98
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 88.20
Mean single sequence MFE -35.27
Consensus MFE -27.72
Energy contribution -28.70
Covariance contribution 0.98
Combinations/Pair 1.06
Mean z-score -2.04
Structure conservation index 0.79
SVM decision value 0.15
SVM RNA-class probability 0.606904
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12339097 98 + 22224390
ACUACCGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACC------AGAGUACA-GGUGGUGCUUAUUCUGCUGGUGGUGUUGCUCGGGUGCUCCAAUUGGUUG--G-
....((((((((((..((((((..((..((....((((((------........-)))))))).))..))))).)..)))))).)))).....((((....)))--)- ( -32.30)
>DroSec_CAF1 15857 108 + 1
ACUACAGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACCGAGUACAUAGUACAUGGUGGUGCUCAUUCUGCUGGUGGUGCUGUUCGGCUGCUCCAAUUGGUGGUGGU
(((((...((((....((((((..((..((....(((((((.((((...)))).))))))))).))..)))))).(((.((.(.....).)).)))))))...))))) ( -36.60)
>DroSim_CAF1 15364 105 + 1
ACUACAGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACCGAGUACAUAGUACAUGGUGGUGCUCAUUCUGCUGGUGGUGCUCUUCGGCUGCUCCAAUUGGUGGU---
(((((.(((.......((((((..((..((....(((((((.((((...)))).))))))))).))..)))))).(((.((.(....)..)).)))))).)))))--- ( -36.90)
>consensus
ACUACAGAUAAUAUUGCAGCAGGCUGUUGUUAAAACCACCGAGUACAUAGUACAUGGUGGUGCUCAUUCUGCUGGUGGUGCUGUUCGGCUGCUCCAAUUGGUGGU_G_
.((((.(((.......((((((..((..((....(((((((.(((.....))).))))))))).))..)))))).(((.((.........)).)))))).)))).... (-27.72 = -28.70 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:24 2006