Locus 4746

Sequence ID X_DroMel_CAF1
Location 12,330,516 – 12,330,615
Length 99
Max. P 0.715416
window7783

overview

Window 3

Location 12,330,516 – 12,330,615
Length 99
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 86.10
Mean single sequence MFE -13.61
Consensus MFE -9.68
Energy contribution -9.43
Covariance contribution -0.25
Combinations/Pair 1.33
Mean z-score -1.78
Structure conservation index 0.71
SVM decision value 0.39
SVM RNA-class probability 0.715416
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12330516 99 - 22224390
ACCAUAAACAAA-ACAUAACAAAAUGGAAAACAAACAAAGAAGGCCAGUCAUUUACAUUCUUUGAGGUUUGAAUAAAGAAACUAAAAAUUUACUGGGCAA
.((((.......-..........))))...............(.(((((..((((..(((((((.........)))))))..)))).....))))).).. ( -11.73)
>DroSec_CAF1 7666 93 - 1
AC-AUAAACA------AAACAAAAUGGAAAACAAACAAGGAAGGCCAGUAGUUUACAAUUUUUGAGGUUUGAACAAAGAAACUAAAAAUUUACUGGGCAA
..-.......------..........................(.((((((......(((((((..(((((........)))))))))))))))))).).. ( -12.60)
>DroSim_CAF1 8188 99 - 1
ACCAUAAACAAA-ACAAAACAAAAUGGAAAACAAACAAAGAAGGCCAGUAGUUUACAAUCUUUGAGGUUUAAACAAAGAAACUAAAAAUUUACUGGGCAA
.((((.......-..........))))...............(.(((((((((((...((((((.........))))))...))))...))))))).).. ( -15.73)
>DroYak_CAF1 8905 100 - 1
ACCAUAAACAAAAACAUAACAAAAUGGAAAACAAACAAGGAAGGCCACUAGUUUACAAUCUUUGAGGCUUAAAAAACGAAACUAAAAGUCGAGUGGCUGG
.((((..................))))...............((((((((((((.((.....))))))).......(((.........)))))))))).. ( -14.37)
>consensus
ACCAUAAACAAA_ACAAAACAAAAUGGAAAACAAACAAAGAAGGCCAGUAGUUUACAAUCUUUGAGGUUUAAACAAAGAAACUAAAAAUUUACUGGGCAA
..........................................(.(((((((((((...((((((.........))))))...))))...))))))).).. ( -9.68 =  -9.43 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:21 2006