Locus 4741

Sequence ID X_DroMel_CAF1
Location 12,317,876 – 12,317,975
Length 99
Max. P 0.958429
window7777

overview

Window 7

Location 12,317,876 – 12,317,975
Length 99
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.72
Mean single sequence MFE -20.23
Consensus MFE -18.75
Energy contribution -19.25
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.98
Structure conservation index 0.93
SVM decision value 1.49
SVM RNA-class probability 0.958429
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12317876 99 - 22224390
GGAUGAUGUAAAAGUUAUGUAAAACCA---------------------AAACCAAGAUACGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAAGAGUCAU
..(((((......(((((((.......---------------------...((............)).......((((((....)))))).............))))))).....))))) ( -20.60)
>DroSec_CAF1 19969 93 - 1
GGAUGAUGUAAAAGUUAUGUAAAA---------------------------CCAAGAUUCGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAAGAGUCAU
..(((((......(((((((....---------------------------......(((......))).....((((((....)))))).............))))))).....))))) ( -21.00)
>DroSim_CAF1 20480 93 - 1
GGAUGAUGUAAAAGUUAUGUAAAA---------------------------CCAAGAUUCGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAGGAGUCAU
..(((((......(((((((....---------------------------......(((......))).....((((((....)))))).............))))))).....))))) ( -21.00)
>DroYak_CAF1 19540 120 - 1
GGAUGAUGUAAAAGUUAUGUAAAAUCACAAAAAUCAUUAAGAUCAGUAAAAACAAGAUUCGAUUAAGAAAACACGCACUGAAAUCAGAGCCUAAAAUUGACCAGCAUGACGAACAGUCAU
..(((((......(((((((.............((.....))(((((..........(((......))).....((.(((....))).)).....)))))...))))))).....))))) ( -18.30)
>consensus
GGAUGAUGUAAAAGUUAUGUAAAA___________________________CCAAGAUUCGAUUAGGAAAACACGCACUGAAAUCAGUGCCUAAAAUUGACCAGCAUGACGAAGAGUCAU
..(((((......(((((((.....................................(((......))).....((((((....)))))).............))))))).....))))) (-18.75 = -19.25 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:16 2006