Locus 4737

Sequence ID X_DroMel_CAF1
Location 12,308,474 – 12,308,569
Length 95
Max. P 0.946010
window7769

overview

Window 9

Location 12,308,474 – 12,308,569
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.21
Mean single sequence MFE -18.13
Consensus MFE -9.44
Energy contribution -9.60
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -2.78
Structure conservation index 0.52
SVM decision value 1.36
SVM RNA-class probability 0.946010
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12308474 95 - 22224390
UC-AAUCUCCGCCAUCCAUCCAAUGGCCCUU--GGGACAUUCAUUUCC---------------UACAUCUUCCCAGCAUUCGG-------UUUUAUUGUCCCAGAACUUUGAACCACUAA
((-((.....(((((.......)))))..((--((((((.......((---------------..................))-------......))))))))....))))........ ( -18.09)
>DroPse_CAF1 9822 117 - 1
-CAUUUCCCCAUCAUACAUACAAUAUACCCUCAUGAACAUUCACUUGCCAUCUCAUGCAUACAUACUUAUGUACACCAUUCGUGGCGGCUGUUUAUUGUUCAAGAACUUUGACCC--UAA
-.............................((.((((((..((.(((((((...(((..(((((....)))))...)))..))))))).)).....)))))).))..........--... ( -19.00)
>DroSec_CAF1 10706 96 - 1
UC-AAUCUCCGCCAUCCAUCCAAUGGCCCUU--GGGACAUUCACUUCCUC-------------UACAUCUUUCCAGCAUUCGG-------UUUUAUUGUGCCAGAACUUUGAACC-CCAA
..-.......(((((.......)))))...(--(((...((((.(((...-------------((((.....((.......))-------......))))...)))...)))).)-))). ( -14.80)
>DroSim_CAF1 11221 96 - 1
UC-AGUGUCCGCCAUCCAUCCAAUGGCCCUU--GGGACAUUCACUUCCUC-------------UACAUCUUUCCAGCAUUCGG-------UUUUAUUGUCCCAGAACUUUGAACC-CCAA
((-((.((.((((((.......)))))...(--((((((.......((..-------------..................))-------......)))))))).)).))))...-.... ( -18.77)
>DroEre_CAF1 10783 94 - 1
UC-AAUCUCCGCCAUCCAUCCAAUGGCCCAU--GGGACAUUCACUUCC---------------CACAUCUUUCCAGCAUUCGG-------CUUUAUUGUCCCAGAACUUUGAACC-CCAA
((-((..((.(((((.......)))))...(--((((((.........---------------...........(((.....)-------))....)))))))))...))))...-.... ( -16.95)
>DroYak_CAF1 10172 94 - 1
UC-AAUCUUCGCCAUCCAUCCAAUGGCCCAU--GGGACAUUCACUUCC---------------UACAUCUUUCCAGCAUUCGG-------UUUUAUUGUCCCAGAACUUUGAACC-CCAA
((-((..((((((((.......)))))...(--((((((.......((---------------..................))-------......))))))))))..))))...-.... ( -21.19)
>consensus
UC_AAUCUCCGCCAUCCAUCCAAUGGCCCUU__GGGACAUUCACUUCC_______________UACAUCUUUCCAGCAUUCGG_______UUUUAUUGUCCCAGAACUUUGAACC_CCAA
..........(((((.......)))))......((((((.........................................................)))))).................. ( -9.44 =  -9.60 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:09 2006