Locus 473

Sequence ID X_DroMel_CAF1
Location 1,387,592 – 1,387,690
Length 98
Max. P 0.650696
window726

overview

Window 6

Location 1,387,592 – 1,387,690
Length 98
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 78.57
Mean single sequence MFE -31.33
Consensus MFE -19.43
Energy contribution -20.32
Covariance contribution 0.89
Combinations/Pair 1.10
Mean z-score -1.78
Structure conservation index 0.62
SVM decision value 0.24
SVM RNA-class probability 0.650696
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1387592 98 - 22224390
AGACGAAGGGAUCCGAUGCACU------------CAUCGCCUUCUUAUUUCCUUUCCAUCCGCCAACAGGCG-CCACC--------CCAGCCUCCUGCCCAGCCACAUCAGCAGGGGCA
....(((((((..(((((....------------)))))..........)))))))....((((....))))-.....--------...(((.(((((............)))))))). ( -29.00)
>DroSec_CAF1 15012 98 - 1
AGACGAAGGGAUCCGAUGCACU------------CAUCGCCUUCUUAUUUCCUUUCCAUCCGCCACCAGGCG-CCACC--------CCAGCCUCCUGCCCAGCCACAUCAGCAGGGGCA
....(((((((..(((((....------------)))))..........)))))))....((((....))))-.....--------...(((.(((((............)))))))). ( -29.00)
>DroEre_CAF1 13857 119 - 1
AGAUGGAGAGCUCCGAUGCACUCGGUGCUCAGUGCAGUGCCUUCUUAUUUCCUUUCCAACCGCCAACAGGCAACCUCCGCCAACCCCCCACCUCCUGGGCAGCCCCAUCAGCAGGGGCA
.(.((((((((.((((.....)))).))))...............................(((....)))....)))).).....((((.....))))..(((((.......))))). ( -36.00)
>consensus
AGACGAAGGGAUCCGAUGCACU____________CAUCGCCUUCUUAUUUCCUUUCCAUCCGCCAACAGGCG_CCACC________CCAGCCUCCUGCCCAGCCACAUCAGCAGGGGCA
....(((((....(((((................)))))))))).................(((....)))..................(((.(((((............)))))))). (-19.43 = -20.32 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:24 2006