| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,295,057 – 12,295,157 |
| Length | 100 |
| Max. P | 0.911367 |
| Location | 12,295,057 – 12,295,157 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.61 |
| Mean single sequence MFE | -37.71 |
| Consensus MFE | -23.29 |
| Energy contribution | -23.18 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12295057 100 - 22224390 AA--UU-UACAGCACGCCCCAGGAAUUCCGAAGGUUCUUGUCGGGAAUCGCCUGCACUUGGCCUUCAAGCGACAGGUGGCGGCCAAACAGGCCGAGACCUACG ..--..-.......(((....((....))(((((((...((((((.....)))).))..)))))))..)))..((((..(((((.....)))))..))))... ( -36.50) >DroVir_CAF1 419 100 - 1 UA--UU-UGUAGCAUGCGCCCGGCAUACCCAAAGUGCUUGUAGGCAAUCGCUUGCAUUUGGCCUACAAACGUCAGGUGGCCGCCAAACAGGCGGAGACCUACG ..--((-(((((.....(((.(((((.......)))))(((((((....)))))))...))))))))))(((.((((..(((((.....)))))..))))))) ( -38.50) >DroGri_CAF1 4820 100 - 1 UG--UU-UGCAGCAUGCACCUGGCAUACCCAAAGUGCUCGUCGGCAAUCGUCUCCAUUUGGCGUACAAGCGUCAGGUGGCCGCCAAACAGGCGGAGACGUAUG ..--.(-(((.((..((((.(((.....)))..))))..))..)))).((((((((((((((((....)))))))))))(((((.....)))))))))).... ( -40.20) >DroWil_CAF1 321 100 - 1 AU--UG-CACAGCAUGCUCCUGGUAUACCCAAGGUCCUGGUAGGCAACCGUCUACAUUUGGCCUUCAAACGUCAGGUGGCUGCCAAGCAAGCCGAGUCCUAUG .(--((-(...(((.((((((((..(....((((((...((((((....))))))....))))))...)..))))).))))))...))))............. ( -31.00) >DroMoj_CAF1 5074 101 - 1 UA--UUCUACAGCAUGCGCCUGGCAUACCCAAGGUGCUUGUGGGCAAUCGCUUACAUUUGGCCUACAAGCGCCAGGUGGCUGCCAAGACGGCGGAAACCUAUG ..--.........((((.....))))......(((((((((((((...............)))))))))))))((((..(((((.....)))))..))))... ( -41.66) >DroAna_CAF1 5204 102 - 1 UAUUUU-UCUAGCACGCCCCUGGUAUUCCAAAAGUGUUGGUGGGCAACCGGCUGCACUUGGCUUUUAAGCGUCAGGUGGCGGCCAAACAGGCCGAGACCUACG ......-........(((..(((....))).((((((.(.(((....))).).))))))))).......(((.((((..(((((.....)))))..))))))) ( -38.40) >consensus UA__UU_UACAGCAUGCCCCUGGCAUACCCAAAGUGCUUGUAGGCAAUCGCCUGCAUUUGGCCUACAAGCGUCAGGUGGCCGCCAAACAGGCCGAGACCUACG ..........(((((......((....))....))))).(((((..........((((((((........)))))))).(((((.....)))))...))))). (-23.29 = -23.18 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:56 2006