Locus 4727

Sequence ID X_DroMel_CAF1
Location 12,291,552 – 12,291,653
Length 101
Max. P 0.668198
window7752

overview

Window 2

Location 12,291,552 – 12,291,653
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 76.53
Mean single sequence MFE -14.73
Consensus MFE -13.50
Energy contribution -13.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score 0.03
Structure conservation index 0.92
SVM decision value 0.28
SVM RNA-class probability 0.668198
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12291552 101 + 22224390
UUUUAACUUUUUAUAUUUUCAAUUUGAUUUUAAUGAUGAUGUUUUGUGCACUAUGUCGAGCAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU
.....((.....(((((.(((............))).)))))...)).......(((.....)))..(((((((..((.(((....))).)).))))))). ( -14.80)
>DroSec_CAF1 1156 78 + 1
GUUUAACUUUUUAUAUUUUGAAACUGAUUU-----------------------UGUCGAGCAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU
.........................((.((-----------------------((.....)))).))(((((((..((.(((....))).)).))))))). ( -14.10)
>DroYak_CAF1 1075 92 + 1
UUUGAACUUUUAAUAUUUAAAAACUGAUUUGAAA-----UUUUU----CUUAAUGUCGAGAAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU
...............((((((......)))))).-----.((((----(((......)))))))...(((((((..((.(((....))).)).))))))). ( -15.30)
>consensus
UUUUAACUUUUUAUAUUUUAAAACUGAUUU_AA______U_UUU____C___AUGUCGAGCAGACUCACCUUCAUUGCUGGAAGUUUCUUGCUUGGGGGUU
......................................................(((.....)))..(((((((..((.(((....))).)).))))))). (-13.50 = -13.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:54 2006