| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,268,642 – 12,268,754 |
| Length | 112 |
| Max. P | 0.997933 |
| Location | 12,268,642 – 12,268,754 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.08 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -20.58 |
| Energy contribution | -22.33 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.64 |
| SVM decision value | 2.96 |
| SVM RNA-class probability | 0.997933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12268642 112 + 22224390 AGGUUUCUUCACCCUCAUCAACGUCAUCCCCACCCCCUUUUCAACCAUUUUUCAAUGUCAUUCCGCAUACGUGACACACUUCCCUAAGGGGAGAAGGGGGGAGGGGGGGAUC .(((......))).........(((.(((((..(((((((((.............((((((.........))))))....((((....)))))))))))))..)))))))). ( -39.20) >DroSec_CAF1 15017 107 + 1 AGGUUUCUUCACCCUCAUCAACGUCUGCCCCACCCCCUUU-CCACCAUUUUUCAAUGUCAUUUCGCAUACGUGACACACUUCCCUAGGGCG----GGGGGAAAGGGGGGAUC .(((......)))...................((((((((-((.((.........((((((.........))))))..((.((....)).)----))))))))))))).... ( -33.30) >DroYak_CAF1 3648 95 + 1 AGGUUUCCCCACC--CAUCAAAGCCUCUACCUCCUCCUCU------UUUAUUCAAUGUCAUUUCGCAUACGUGACACAAUUUCCUCAGGAGGG---------AGGGGGGAUC .(((..((((.((--(........................------.........((((((.........)))))).....(((...))))))---------.))))..))) ( -24.70) >consensus AGGUUUCUUCACCCUCAUCAACGUCUCCCCCACCCCCUUU_C_ACCAUUUUUCAAUGUCAUUUCGCAUACGUGACACACUUCCCUAAGGAG_G__GGGGG_AAGGGGGGAUC .(((......)))...................(((((((((((.((.........((((((.........))))))...(((((...)))))...)).)))))))))))... (-20.58 = -22.33 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:49 2006