Locus 4722

Sequence ID X_DroMel_CAF1
Location 12,264,815 – 12,264,909
Length 94
Max. P 0.949841
window7745

overview

Window 5

Location 12,264,815 – 12,264,909
Length 94
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 90.12
Mean single sequence MFE -36.16
Consensus MFE -29.88
Energy contribution -29.50
Covariance contribution -0.38
Combinations/Pair 1.09
Mean z-score -2.34
Structure conservation index 0.83
SVM decision value 1.40
SVM RNA-class probability 0.949841
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12264815 94 - 22224390
ACCCCUG--UUUAACCCCUGCAACACUGCGGACACCAUCGGAUAUUGCCGGA---------CAAUCCGGACGGAAGCCCAUCCGCCGGACUGUCGGCGGGACAUC
.((((((--........(((((....))))).......))).....((((.(---------((.(((((.((((......))))))))).))))))))))..... ( -36.76)
>DroSec_CAF1 11298 94 - 1
ACCCCUG--UUUAACCCCUGCAACUCUGUGGACACCAUCGGAUAUUGCCGGA---------CAAUCUGGACGGAAGCCCAUCCGCCGGACUGUCGGCGGGACAUC
.......--......(((......(((((((...))).))))....((((.(---------((.(((((.((((......))))))))).))))))))))..... ( -32.90)
>DroEre_CAF1 9459 94 - 1
ACCCCUG--UUUAACCCCUGCAACUAGGCGGACACCAUCGGAUAUUGCCGGA---------CAAUCCGGACGGAAAACCAUCCGCCGGACUGUCGGCGGGACAUC
.((((((--.....((((((....)))).)).......))).....((((.(---------((.(((((.((((......))))))))).))))))))))..... ( -36.40)
>DroYak_CAF1 39 105 - 1
ACCCCUGUGUUUAACUCCUGCAACUCGGCGGACACCAUCGGAUAUUGCCGGACAAUACGGACAAUCCGGACGGAAACCCAUCCGCCGGACUGUCGGCGGGACAUC
.((((((((((....(((.((((.(((..((...))..)))...)))).))).))))).((((.(((((.((((......))))))))).)))))).)))..... ( -38.60)
>consensus
ACCCCUG__UUUAACCCCUGCAACUCGGCGGACACCAUCGGAUAUUGCCGGA_________CAAUCCGGACGGAAACCCAUCCGCCGGACUGUCGGCGGGACAUC
..(((............((((......))))...............(((((..........((.(((((.((((......))))))))).))))))))))..... (-29.88 = -29.50 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:48 2006