| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,264,482 – 12,264,601 |
| Length | 119 |
| Max. P | 0.573533 |
| Location | 12,264,482 – 12,264,601 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.61 |
| Mean single sequence MFE | -34.28 |
| Consensus MFE | -23.32 |
| Energy contribution | -24.28 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12264482 119 + 22224390 GUGUGGCAAUAUGGUCAA-GCAUUUUCAUUAUUGUCUGGCCAACUCUGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUGUGGCC ....((((((((((....-......))).))))))).((((((((((((((((((...((((......(((((((.........)))))))..))))...)))))))))).))).))))) ( -38.30) >DroPse_CAF1 24435 118 + 1 GUGUGGCAAUAUGGCCAAGGCAUUUUCAUUAUUGUCUGGCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCAGCAGACAAACCGCCGGAAAAUGAAACCCAUGAAUCAGUAGUGUGGCC ....(((.(((((((((.((((..........))))))))).((--(((((((((...((((....((.....)).......((...))....))))...))))))))))).)))).))) ( -34.30) >DroSec_CAF1 10985 94 + 1 GUGUGGCAAUAUGG------------------------GCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCGGCACACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUGUGGCC .............(------------------------((((((--(((((((((...((((......(((((((.........)))))))..))))...)))))))))))....))))) ( -29.80) >DroEre_CAF1 9123 117 + 1 GUGUGGCAAUAUGGGCAA-GCAUUUUCAUUAUUGUCUGGCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUAAGGCC ....(((....(((.((.-.((..........))..)).)))((--(((((((((...((((......(((((((.........)))))))..))))...)))))))))))......))) ( -34.70) >DroPer_CAF1 23458 118 + 1 GUGUGGCAAUAUGGCCAAGGCAUUUUCAUUAUUGUCUGGCCAAC--UGAUUUAUGCCAUUCAAUUCGCUUUCAGCAGACAAACCGCCGGAAAAUGAAACCCAUGAAUCAGUAGUGUGGCC ....(((.(((((((((.((((..........))))))))).((--(((((((((...((((....((.....)).......((...))....))))...))))))))))).)))).))) ( -34.30) >consensus GUGUGGCAAUAUGGCCAA_GCAUUUUCAUUAUUGUCUGGCCAAC__UGAUUUAUGCCAUUCAAUUCGCUUUCGGCAGACAAACCGCCGGAAAAUGAAGCCCAUGAAUCAGUAGUGUGGCC ....(((.((((((((...(((..........)))..)))).....(((((((((...((((......(((((((.........)))))))..))))...)))))))))...)))).))) (-23.32 = -24.28 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:47 2006