Locus 4720

Sequence ID X_DroMel_CAF1
Location 12,264,131 – 12,264,224
Length 93
Max. P 0.998214
window7743

overview

Window 3

Location 12,264,131 – 12,264,224
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 71.74
Mean single sequence MFE -37.60
Consensus MFE -25.43
Energy contribution -25.75
Covariance contribution 0.32
Combinations/Pair 1.21
Mean z-score -2.42
Structure conservation index 0.68
SVM decision value 3.04
SVM RNA-class probability 0.998214
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12264131 93 - 22224390
ACGAAAGGAUUCGUGUGGCAUCCAACAAAUGUCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG---------------------------GAGAUUGCAUGCUGCAAG
.(....)((((((((((((((.((((........)))).))))))))))))))...((.(((((((.........---------------------------..)).))))).))..... ( -30.40)
>DroPse_CAF1 23890 119 - 1
AUGUGC-GGUUCGUGUGGCAUGUAACAAAUGCCGGCUGGAUGCCACGCGAGUUAUGGGAACGCAUCAAGGUGCUGCCUGGCCUGCACUGGCCCUGUCCCUAGCCGCUUGCAUGCUGCAUA
.(((((-(((..(((((((((.......)))))(((.....)))..(((.((((.((((..((((....)))).....((((......))))...)))))))))))..)))))))))))) ( -49.80)
>DroSec_CAF1 10635 93 - 1
ACGAAAGGAUUCGUGUGGCAUCCAACAAAUGUCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG---------------------------GAGAUUGCAUGCUGCAAG
.(....)((((((((((((((.((((........)))).))))))))))))))...((.(((((((.........---------------------------..)).))))).))..... ( -30.40)
>DroEre_CAF1 8765 92 - 1
ACGAAAGAA-UCGUGUGGCAUCCAACAAAUGCCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG---------------------------AAGAUUGCAUGCUGCAAG
.(....)..-(((((((((((.((((........)))).)))))))))))..........((((.((.....(((---------------------------(...)))).)).)))).. ( -27.60)
>DroPer_CAF1 22845 119 - 1
AUGUGC-GGUUCGUGUGGCAUGUAACAAAUGCCGGCUGGAUGCCACGCGAGUUAUGGGAACGCAUCAAGGUGCUGCCUGGCCUGCACUGGCCCUGUCCCUAGCCGCUUGCAUGCUGCAUA
.(((((-(((..(((((((((.......)))))(((.....)))..(((.((((.((((..((((....)))).....((((......))))...)))))))))))..)))))))))))) ( -49.80)
>consensus
ACGAAAGGAUUCGUGUGGCAUCCAACAAAUGCCGGUUGCAUGCCAUGCGAAUUAUAAGAAUGCAUCAAGAUGGCG___________________________CAGAUUGCAUGCUGCAAG
.......((((((((((((((.((((........)))).))))))))))))))...((.(((((..............((((......))))...............))))).))..... (-25.43 = -25.75 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:46 2006