| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,263,780 – 12,263,899 |
| Length | 119 |
| Max. P | 0.523291 |
| Location | 12,263,780 – 12,263,899 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.87 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -21.71 |
| Energy contribution | -21.60 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12263780 119 - 22224390 GCAAAUGUCUUAAAGUAUUGCCUAGCAAAGCGCAAGCCCAACGUGA-AUAUAAUAAUAAUUUACGUAAACUAUAAUAACUACGGUUUAUAUGGGUUUUCGCACAAAGGCUUCGGCCAAAU .....(((.........((((...)))).(((.(((((((((((((-((.........))))))))....(((((..((....)))))))))))))).))))))..(((....))).... ( -32.20) >DroSec_CAF1 10314 119 - 1 GAAAAUGUCUUAAAGUAUUGCCUAGCAAAGCACAGGCCCAACGUGA-AUAUAAUAAUAAUUUACGUAGACUAUAAUAACUACGGUUUAUAUGGGUUUUCGCACAAAGGCUUCGGCCAAAU ((((((((((....((.((((...)))).))..))))...((((((-((.........))))))))...(((((..(((....)))..))))))))))).......(((....))).... ( -28.20) >DroEre_CAF1 8441 119 - 1 GCAAAUGGCUUAAAGUGUUUCCUGGCAAAGCACAAGCCCA-CGUGAAAUAUAAUAAUAAUUUACGUAAACUAUAAUAACUACGGUUUAUAUGGGUUUUCGCACAAAGGCUUCGACCAAAU .....(((.(..((((.(((....(((((((........(-((((((.(((....))).)))))))...(((((..(((....)))..)))))))))).))..))).))))..))))... ( -26.00) >consensus GCAAAUGUCUUAAAGUAUUGCCUAGCAAAGCACAAGCCCAACGUGA_AUAUAAUAAUAAUUUACGUAAACUAUAAUAACUACGGUUUAUAUGGGUUUUCGCACAAAGGCUUCGGCCAAAU .............................((..(((((((..((((..(((....)))..))))((((((..((.....))..)))))).)))))))..)).....(((....))).... (-21.71 = -21.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:45 2006