| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,256,474 – 12,256,577 |
| Length | 103 |
| Max. P | 0.553353 |
| Location | 12,256,474 – 12,256,577 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 91.91 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -23.09 |
| Energy contribution | -23.43 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12256474 103 + 22224390 CCACCUUUGCCUUCAUUUCCUCAUUUUCACAAGUUUCCCCCGAAGAAUGAGGGUGAAAAAAUUGAGAGAUUGGCCGUUUAAAAAAGCGAGCCACGUAGAAAGA .....((((((((.((((..(((((((((....((((....))))..)))))))))..)))).)))....(((((((((....))))).)))).))))).... ( -23.80) >DroSec_CAF1 3142 103 + 1 CCACCUUUGCCUCCAUUUCCUUAUUUUCUCAAGUUUCCCCCGAAGAAUGAGGGCGGGAAAAUUGAGAGAUUGGCCGUUUAAAAAAGCGAGCCACGUAGAAAGA .....(((((..............((((((((.((((((((..........)).)))))).)))))))).(((((((((....))))).)))).))))).... ( -31.20) >DroEre_CAF1 954 100 + 1 CCACCU-UGCCUCCAUUUCCUCAUUUUCUCAAGUUUGCCCCAAUGAAUGGGG--GGAAAAAUUGAGAGAUUGGCCGUUUAAAAAAGCGAGCCACGUAGAAAGA ......-........((((..(..((((((((.(((.(((((.....)))))--.)))...)))))))).(((((((((....))))).)))).)..)))).. ( -32.30) >consensus CCACCUUUGCCUCCAUUUCCUCAUUUUCUCAAGUUUCCCCCGAAGAAUGAGGG_GGAAAAAUUGAGAGAUUGGCCGUUUAAAAAAGCGAGCCACGUAGAAAGA ...............((((..(..((((((((.((((.(((.........))).))))...)))))))).(((((((((....))))).)))).)..)))).. (-23.09 = -23.43 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:42 2006