| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,254,727 – 12,254,823 |
| Length | 96 |
| Max. P | 0.575949 |
| Location | 12,254,727 – 12,254,823 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.48 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.85 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12254727 96 - 22224390 UUGUCUGCUGUGUUCUUAAGUUUUGCUUCACCGU-UUGCGGUGUGCA-AAUGCAAAUUGCUUGGCUUGCAUAUUUCCACCACCCGCCCCCUCGUCGCU .(((..((((.((........(((((..(((((.-...))))).)))-))........)).))))..)))............................ ( -20.29) >DroGri_CAF1 1537 91 - 1 UCGUCUGCUGUGUU-UCAAGUUUUGCUUUACCGU-UUGCGGUUUGCA-AAUGCAAAUUGCUUACCUUGCAUAUCCCUUAUAC----CCUUUUGUUGUU .........((((.-........(((......((-..(((((((((.-...)))))))))..))...)))........))))----............ ( -16.23) >DroSec_CAF1 1432 93 - 1 UUGUCUGCUGUGUUCUUAAGUUUUGCUUCACCGU-UUGCGGUGUGCA-AAUGCAAAUUGCUUGGCUUGCAUAUUUUCCCCACCGUCCC---CGUCCCU .(((..((((.((........(((((..(((((.-...))))).)))-))........)).))))..)))..................---....... ( -20.29) >DroWil_CAF1 848 80 - 1 UUCUCUGCCGUGUU-UCAAGUUUUGCUUUACCGUUUUGCGGUGUGCAAAAUGCAAAUUGCUUGGCAUGCAUAUUUUCUAUA----------------- .....(((((.((.-....(((((((..(((((.....))))).))))))).......)).)))))...............----------------- ( -21.60) >consensus UUGUCUGCUGUGUU_UCAAGUUUUGCUUCACCGU_UUGCGGUGUGCA_AAUGCAAAUUGCUUGGCUUGCAUAUUUCCUACAC____CC___CGUCGCU ........(((((..(((((((((((..(((((.....)))))........)))))..))))))...))))).......................... (-15.10 = -15.85 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:41 2006