Locus 4714

Sequence ID	X_DroMel_CAF1
Location	12,251,376 – 12,251,487
Length	111
Max. P	0.825186

overview

Window 7

Location	12,251,376 – 12,251,487
Length	111
Sequences	4
Columns	111
Reading direction	forward
Mean pairwise identity	99.10
Mean single sequence MFE	-26.60
Consensus MFE	-26.79
Energy contribution	-26.60
Covariance contribution	-0.19
Combinations/Pair	1.04
Mean z-score	-2.08
Structure conservation index	1.01
SVM decision value	0.69
SVM RNA-class probability	0.825186
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12251376 111 + 22224390
CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUGGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU
.......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60)
>DroSec_CAF1 19410 111 + 1
CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU
.......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60)
>DroEre_CAF1 14661 110 + 1
CCC-AUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU
...-...((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60)
>DroYak_CAF1 7803 111 + 1
CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU
.......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... ( -26.60)
>consensus
CCCUAUUUCCUGUGCCACUUUCCACUUGCCGCUCUCGUAACUUUUGCUAGUGCGGCGACAUCUGCCAAUGUUUUGAACAUUGCAACACACACGCUAGAGGACAAACUCCUU
.......((((.(((..........(((((((.((.(((.....))).)).)))))))....(((.(((((.....))))))))........)).).)))).......... (-26.79 = -26.60 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:40 2006