Locus 4707

Sequence ID X_DroMel_CAF1
Location 12,246,783 – 12,246,881
Length 98
Max. P 0.992289
window7722

overview

Window 2

Location 12,246,783 – 12,246,881
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 75.22
Mean single sequence MFE -34.67
Consensus MFE -18.44
Energy contribution -19.30
Covariance contribution 0.86
Combinations/Pair 1.14
Mean z-score -2.68
Structure conservation index 0.53
SVM decision value 2.32
SVM RNA-class probability 0.992289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12246783 98 - 22224390
CCAAGGACUUUGAUGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCAAGAGCUCUUUAUGUACUACUCUGUGC--GU-------
....((((......)))).(((..(.(.((((((((........)))))))).)).)))....((((.....))))....((((((......))))--))------- ( -29.40)
>DroPse_CAF1 44208 84 - 1
CCGGG-----UGAUGUCCAGCCCGGAUGUCGUUUUCAAUAAA-GGCAUUGGGGCUGGGCGUUAAGCUGUA--------UAGUGUACACAUAUGUAC--GC-------
.(((.-----(((((((((((((.((((((............-)))))).)))))))))))))..)))..--------..(((((((....)))))--))------- ( -40.80)
>DroSec_CAF1 14947 98 - 1
CCAAGGACUUUGACGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCGAGAGCUCUUUAUGUACUACUCAGUGC--GU-------
..(((((.(((((((((...(((.(....)((((((........)))))))))...)))))))))..((....)))))))(((((((....)))))--))------- ( -31.90)
>DroSim_CAF1 4705 98 - 1
CCAAGGACUUUGACGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCGAGAGCUCUUUAUGUACUACUCAGUGC--GU-------
..(((((.(((((((((...(((.(....)((((((........)))))))))...)))))))))..((....)))))))(((((((....)))))--))------- ( -31.90)
>DroYak_CAF1 3143 103 - 1
CCAAGGACUUUGACGUCCUGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGAACAGGCGUUAAGCUGCG--AGCUCUUUAUGUGCUACUCUCUACGU--UUGUAUG
((.........(((((((.....)))))))((((((........)))))))).((((((((..((.....--(((.(.....).)))...))..))))--))))... ( -33.20)
>DroPer_CAF1 41304 84 - 1
CCGGG-----UGAUGUCCAGCCCGGAUGUCGUUUUCAAUAAA-GGCAUUGGGGCUGGGCGUUAAGCUGUA--------CAGUGUACACAUAUGUAC--GC-------
.(((.-----(((((((((((((.((((((............-)))))).)))))))))))))..)))..--------..(((((((....)))))--))------- ( -40.80)
>consensus
CCAAGGACUUUGACGUCCAGCCCGGAUGUCGAUUCCAAUAAACGGGAAUCGGGACAGGCGUUAAGCUGCA__AGCUCUUUAUGUACUACUCUGUAC__GU_______
((.........(((((((.....)))))))((((((........))))))))....(((.....)))...............((((......))))........... (-18.44 = -19.30 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:28 2006