| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,245,424 – 12,245,538 |
| Length | 114 |
| Max. P | 0.716804 |
| Location | 12,245,424 – 12,245,538 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -18.72 |
| Energy contribution | -18.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12245424 114 + 22224390 CUUCUAUGGCUUGCAUUGAUUGUAAGCGCAACAUUUGUAUCCAAAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAACACCAUUUCAACUGUGGAAGCAA ......(((((((((.....))))))).))....((((.((((...(((((....(((((((.....)))))..))...)))))..(((((......)))))...)))).)))) ( -30.60) >DroSec_CAF1 13439 106 + 1 CAU-------UAGAUUAGUUUGCAAGAG-AACAUUUGUAUCCAAAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAAAAACAUUUUAUCUGUGGAAGCAU ...-------..........(((..(((-(....(((((((......)))))))...))))((((....)))).....((((.((..(((((....))))))).))))..))). ( -23.50) >DroSim_CAF1 3198 91 + 1 C----------------------AAGAG-AACAUUUGUGUCCAAAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAAAAACAUUUUAUCUGUGGAAGCAA .----------------------..(((-(....(((((((......)))))))...))))((((....))))((.(.((((.((..(((((....))))))).)))).).)). ( -20.60) >consensus C_U_______U_G__U_G_UUG_AAGAG_AACAUUUGUAUCCAAAACGAUGCAAUCCUCUCGUCCAACGGGACUGGUACCAUCGAAUUGAAAAACAUUUUAUCUGUGGAAGCAA ...................................(((.((((...(((((....(((((((.....)))))..))...)))))...((((......))))....)))).))). (-18.72 = -18.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006