| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,243,419 – 12,243,532 |
| Length | 113 |
| Max. P | 0.534246 |
| Location | 12,243,419 – 12,243,532 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.76 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -17.17 |
| Energy contribution | -17.45 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12243419 113 + 22224390 AUUACCAUUUUUGUAUUUUUC-------CCUUAGGUUCUACUUUCCAUUUACGUGCUGAUGAGUGAGUGCAAUCCAGAUGAUCCGCUAGUCAUGUGCAUUGCCGAUCAGUACAAAACCAA ........(((((((((..((-------...........((((.(((((........)))).).))))(((((.((.(((((......))))).)).))))).))..))))))))).... ( -23.30) >DroSec_CAF1 9435 112 + 1 ACCAGCAUUUUUGGAUUUUUU-------CC-UAGGUUCUACUUUCUAUUUACGUGCUAAUGAGUGAGUGCAAUCCAGAUGAUCCACUAGUCAUGUGCAUUGCCGAUCAGUACAAGACCAA ............(((.....)-------))-..((((.((((.((.((((((...(....).))))))(((((.((.(((((......))))).)).))))).))..))))...)))).. ( -23.00) >DroSim_CAF1 601 112 + 1 ACUAGCAUUUUUGGAUUUUUC-------CC-UAGGUUCUACUUUCUAUUUACGUGCUAAUGAGUGAGUGCAAUCCAGAUGAUCCACUAGUCAUGUGCAUUGCCGAUCAGUACAAGACCAA ..((((((....(((....))-------).-((((........)))).....)))))).(((.(((..(((((.((.(((((......))))).)).)))))...))).).))....... ( -23.60) >DroEre_CAF1 8347 112 + 1 AUUGACCAUUUUGAAUUUCUC-------CC-CAGGUCCUACUUUCCAUUUACGUGCUGAUGAUUGAGUGCAAUCCGGACGAUCCACUAGUCAUGUGCAUUGCCGAUCAGUACAAAACAAA ...((((.....((.....))-------..-..))))...............(((((((((((((....)))))(((.((((.(((.......))).)))))))))))))))........ ( -27.30) >DroYak_CAF1 588 118 + 1 -UUACCAAUUAUGAAUUUUUCAUUUUUGAU-UAGGUUCUACUUUCCAUUUACGUGCUGAUGAGUGAGUGCAAUCCAGACGAUCCACUAGUCAUGUGCAUUGCCGAUCAGUACAAAACAAA -...........((((((.(((....))).-.))))))..............((((((((..((.((((((.....(((.........)))...))))))))..))))))))........ ( -25.20) >DroAna_CAF1 8784 86 + 1 ----------------------------------GUCCUUCUGUCCAUCUAUGUCCUGAUGGGCGAGUGCAAUCCGGACGAUCCGCUCGUCAUGUGCAUUGCCGAUCAGUACAAGACCAA ----------------------------------.............(((.(((.(((((.(((.((((((.....(((((.....)))))...))))))))).))))).)))))).... ( -30.70) >consensus AUUACCAUUUUUGAAUUUUUC_______CC_UAGGUUCUACUUUCCAUUUACGUGCUGAUGAGUGAGUGCAAUCCAGACGAUCCACUAGUCAUGUGCAUUGCCGAUCAGUACAAAACCAA ....................................................((((((((..((.((((((.....(((.........)))...))))))))..))))))))........ (-17.17 = -17.45 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:23 2006