Locus 4702

Sequence ID X_DroMel_CAF1
Location 12,237,801 – 12,237,895
Length 94
Max. P 0.985275
window7713

overview

Window 3

Location 12,237,801 – 12,237,895
Length 94
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 74.25
Mean single sequence MFE -26.85
Consensus MFE -14.02
Energy contribution -16.14
Covariance contribution 2.12
Combinations/Pair 1.00
Mean z-score -2.55
Structure conservation index 0.52
SVM decision value 2.00
SVM RNA-class probability 0.985275
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12237801 94 + 22224390
UGUG------------AAUGUGAAUGUGUACAAUGUGCAUACAUGUGUACA--------------GUACAUGUGAUGAUUCAUUUUGCAAUAUUGCAUAUUGUGCGUCGCACUUAAAUUC
..((------------(.(((((...(((((((((((((.(((((((....--------------.)))))))((....))............)))))))))))))))))).)))..... ( -27.70)
>DroSim_CAF1 61439 105 + 1
UGUGAACGUGAAUGUGAAUGUGAAUGUGUACAAUGUGCAUACAUGUGUACA--------------GUACAUGUGAUGAUUCAUUUUGCAAUAUUG-AUAUUGUGCGUCGCACUUAAAUUC
(((((.(((....((((((....((((((((..(((((((....)))))))--------------))))))))....))))))...((((((...-.))))))))))))))......... ( -28.80)
>DroWil_CAF1 28652 83 + 1
UCUG------UAUGUGUGUGUGUGUGUGUAA---------------GUUGA--------------GUACAUGUGAU--UUCAUUUUGCAAUAUUGCAUAUUGUGUGUCGCACUUAAAUUC
....------...(((((.....((((((((---------------((((.--------------......(((..--..)))....)))).)))))))).......)))))........ ( -14.90)
>DroYak_CAF1 45371 114 + 1
UG------UGAAUGUGAAUGUGGAUGUGUACAAUGUGCAUACAUGUGUACACUGUACAGUAUACUGUACAUGUGAUGAUUCAUUUUGCAAUAUUGCAUAUUGUGCGUCGCACUUAAAUUC
..------.((((.(((.(((((...((((((((((((((((....)))((((((((((....))))))).)))...................)))))))))))))))))).))).)))) ( -36.00)
>consensus
UGUG______AAUGUGAAUGUGAAUGUGUACAAUGUGCAUACAUGUGUACA______________GUACAUGUGAUGAUUCAUUUUGCAAUAUUGCAUAUUGUGCGUCGCACUUAAAUUC
.........................((((((..(((((((....)))))))..............))))))((((((...((...((((....))))...))..)))))).......... (-14.02 = -16.14 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:20 2006