| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,236,695 – 12,236,807 |
| Length | 112 |
| Max. P | 0.572017 |
| Location | 12,236,695 – 12,236,807 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.71 |
| Mean single sequence MFE | -18.95 |
| Consensus MFE | -13.47 |
| Energy contribution | -13.80 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12236695 112 - 22224390 AGGUAACGAAAAAAGUUGAAAAAAACAAAAAAAUUUGCCGAGGAACAGGAUGAAGGAAACUUGGACCAGUCCACAUUAGCGUUGAACACUCCCCUUCCGUAAAUAAAAAAGA .(((((........(((......)))........)))))..((((..((((((((....)))(((....)))..............)).)))..)))).............. ( -20.69) >DroSim_CAF1 60357 103 - 1 AG-CAAAAAAAAAAGUUGAAAAA--------AAAUUGCCGAGGAACAGGAUGAAGGAAACUUGGACCAGUCCACAUUAGCGCUGAACACUCCCCUUCCGUAAAUAAAAAAGA .(-(((.................--------...))))...((((..((((((((....)))(((....)))..............)).)))..)))).............. ( -16.15) >DroYak_CAF1 44313 91 - 1 AGCCAACGGAAAAA------------------A---GUCGAGUAACAGGAUGAAGGAAACUUGGACCAGUCCACAUUAGCGCUGAACACUCCCCUUCCGUAAAUAAAAAAGA .....(((((....------------------(---(..((((..((((((((((....)))(((....))).))))....)))...))))..)))))))............ ( -20.00) >consensus AG_CAACGAAAAAAGUUGAAAAA________AA_UUGCCGAGGAACAGGAUGAAGGAAACUUGGACCAGUCCACAUUAGCGCUGAACACUCCCCUUCCGUAAAUAAAAAAGA .........................................((((..((((((((....)))(((....)))..............)).)))..)))).............. (-13.47 = -13.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006