Locus 47

Sequence ID X_DroMel_CAF1
Location 217,559 – 217,652
Length 93
Max. P 0.693484
window58

overview

Window 8

Location 217,559 – 217,652
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 88.46
Mean single sequence MFE -33.68
Consensus MFE -26.96
Energy contribution -26.72
Covariance contribution -0.24
Combinations/Pair 1.26
Mean z-score -2.34
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.693484
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 217559 93 - 22224390
CACUCCUGCAGGACCCACAGAAUUUGUAGAGACACUAAUACUGGAGACUACAUUGCCUGAAUUGGCGGGCAAAUAAGUGCGACUUGGAGGAGG
..(((((.((((.(.(((......(((((...(.(((....))).).)))))(((((((......)))))))....))).).)))).))))). ( -30.40)
>DroSec_CAF1 12564 93 - 1
CACUCCUGCAGGACCCACAGAAUUUGUAGAGACACUAAUACUGGAGACUACAUUGCCUGAAUUGGCGGGCAAAUAAGUGCGACUUGGAGGAGG
..(((((.((((.(.(((......(((((...(.(((....))).).)))))(((((((......)))))))....))).).)))).))))). ( -30.40)
>DroSim_CAF1 9780 93 - 1
CACUCCUGCAGGACCCACAGAAUUUGUAGAGACGCUAAUACUGGAGACUACAUUGCCUGAAUUGGCGUGCAAAUAAGUGCGACUUGGAGGAGG
..(((((.((((.(.(((...((((((....((((((((.(.((..(.....)..)).).))))))))))))))..))).).)))).))))). ( -30.10)
>DroEre_CAF1 13527 93 - 1
CACUCCUGCAGGACCCACAGUAUUUGUAGAGACACUAAUGCUGGAGACCACAUUGCCUGAAUUGGCGGGCAAGUAAGUGCGACUUGGAGGGGG
..(((((.((((..(..(((((((.((......)).)))))))..).((((.(((((((......)))))))....))).).)))).))))). ( -33.00)
>DroYak_CAF1 12616 93 - 1
CACUCCUGCAGGACCCACAGUAUUUGUAGAAACACUAAUACUGGACACUACGUUGCCUGAAUUGGCGGGCAAGUAAGUGCGACUUGGAGGAGG
..(((((.((((.....(((((((.((......)).)))))))(.((((((.(((((((......))))))))).)))))..)))).))))). ( -36.80)
>DroAna_CAF1 15703 93 - 1
CACGCCGGCAGGACCCACCGUAUUGGUGGAAACACUUACACUGGACACCACAGGGCCGGAGCUGGCCGGCAAGUAGGUGCGGCUGGGUGGCAG
(((.(((((.....(((((.....)))))...(((((((.(((.......))).(((((......)))))..)))))))..)))))))).... ( -41.40)
>consensus
CACUCCUGCAGGACCCACAGAAUUUGUAGAGACACUAAUACUGGAGACUACAUUGCCUGAAUUGGCGGGCAAAUAAGUGCGACUUGGAGGAGG
..(((((.((((.(.(((......(((((...((.......))....)))))(((((((......)))))))....))).).)))).))))). (-26.96 = -26.72 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:16 2006