| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,235,947 – 12,236,039 |
| Length | 92 |
| Max. P | 0.957513 |
| Location | 12,235,947 – 12,236,039 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 90.14 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -25.74 |
| Energy contribution | -25.30 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957513 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12235947 92 - 22224390 UCAACAUC-------CAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCG--ACUAAAUGGAG ........-------....((....))(((((...)))))((((((((...........)))))...)))..(((((((((((....)--)))))))))). ( -26.10) >DroSim_CAF1 59660 92 - 1 UCAACAUC-------CAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCU--ACUAAAUGGGG ........-------....((....))(((((...)))))((((((((...........)))))...))).(..((((((((......--))))))))..) ( -25.70) >DroYak_CAF1 43609 101 - 1 UCAACUUUCAACUGGCAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCCAAACCAAAUGGAG ...........(((((...((....))(((((...))))))))))..............((((....)))).((((((((((((....)))))))))))). ( -32.20) >consensus UCAACAUC_______CAACUGGCAACAAGGAGCAACUCCUGCCGGGCGCUUAAAUUUACUGCCCUCAGGCAUUUCAUUUGGUUUCCCC__ACUAAAUGGAG ...................((....))(((((...)))))((((((((...........)))))...)))..((((((((((........)))))))))). (-25.74 = -25.30 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:16 2006