| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,235,528 – 12,235,630 |
| Length | 102 |
| Max. P | 0.564295 |
| Location | 12,235,528 – 12,235,630 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -15.49 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12235528 102 - 22224390 UCGAUUUAUUCGACAGACGCAAAAUAGCGACAUCGACAUCGAAGUGCUGGCAUUUCAAAUUGCAACGCUCAUAAUAAAUUGAAUCAACCUUAAUUCGAUGCU ((((.....))))....(((......))).....(.((((((((((...(((........)))..)))(((........)))...........)))))))). ( -20.10) >DroSim_CAF1 59229 102 - 1 UCGAUUUAUUCGACAGACGCAAAAUAGCGACAUCGACGUCGAAGUGCUGGCAUUUCAAAUUGCAACGCUCAUAAUAAAUUGAAUCAACCUUAAUUCGAUGCU ((((((((((((((.(((((......)))...))...))))))(.((..(((........)))...)).)....)))))))).................... ( -20.70) >DroYak_CAF1 43232 84 - 1 UCGAUUUAUGCGACAGACGCGAAAUAGCAA-----------AUAUGCUGGCAUUUCAAAUUGCAGCGCUCGUAAUAAAUUGAAUCAACCUUAAUU------- (((((((((((((..(.(((....(((((.-----------...)))))(((........))).)))))))).))))))))).............------- ( -21.20) >consensus UCGAUUUAUUCGACAGACGCAAAAUAGCGACAUCGAC_UCGAAGUGCUGGCAUUUCAAAUUGCAACGCUCAUAAUAAAUUGAAUCAACCUUAAUUCGAUGCU ((((((((((.....((.((....(((((...(((....)))..)))))(((........)))...))))..)))))))))).................... (-15.49 = -16.10 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:16 2006