Locus 4697

Sequence ID X_DroMel_CAF1
Location 12,233,094 – 12,233,199
Length 105
Max. P 0.636979
window7707

overview

Window 7

Location 12,233,094 – 12,233,199
Length 105
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -35.58
Consensus MFE -23.90
Energy contribution -24.48
Covariance contribution 0.58
Combinations/Pair 1.11
Mean z-score -1.95
Structure conservation index 0.67
SVM decision value 0.21
SVM RNA-class probability 0.636979
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12233094 105 - 22224390
ACGACGACCAAGAAGGCGUCGCAGUCGCUGUUGCAGUCG------------ACGUUUGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCAAGACUU
.(((((.((.....))))))).((((..((((((.((((------------(((....)))))))......((((...((........))...))))........)))))).)))). ( -39.20)
>DroSec_CAF1 55619 105 - 1
ACGACGACCAAGAAGGCGUCGCAGUCGCAGUUGCAGUCG------------ACGUCCGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAUAUGGCCAAAAAGAGCAGCAAGACUU
.(((((.((.....))))))).((((...(((((.((((------------(((....)))))))......((((...((........))...))))........)))))..)))). ( -37.30)
>DroSim_CAF1 56899 105 - 1
ACGACGACCAAGAAGGCGUCGCAGUCGCAGUUGCAGUCG------------ACGUCCGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCAAGACUU
.(((((.((.....))))))).((((...(((((.((((------------(((....)))))))......((((...((........))...))))........)))))..)))). ( -37.30)
>DroEre_CAF1 53293 117 - 1
ACGACGACCAAGAAGGCGUCGCAGUCGCAGUCGCAGUCGCAGCCGCAGUCGACGUCCACGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCCAGAGUU
.(((((.((.....)))))))..(((((....))...(((.((.((.(((((((....)))))))...)).))..))).............)))(((...........)))...... ( -34.30)
>DroYak_CAF1 40707 105 - 1
ACGACGACCAAGAAGGCGUCGCAGUUGCAGUCGCAGUCGCAGUCGCAGUCGA------------CGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCGGCAAGAGUU
..((((.((.....))))))((..((((....))))..)).((((....)))------------)(((((.((((...((........))...))))(.....).)))))....... ( -29.80)
>consensus
ACGACGACCAAGAAGGCGUCGCAGUCGCAGUUGCAGUCG____________ACGUCCGCGUCGACGUCGCAGCCAGCGUUAAUAUCAAAAAGAUGGCCAAAAAGAGCAGCAAGACUU
.(((((.((.....))))))).((((...(((((.................(((((......)))))....((((...((........))...))))........)))))..)))). (-23.90 = -24.48 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:15 2006