| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,229,484 – 12,229,579 |
| Length | 95 |
| Max. P | 0.650516 |
| Location | 12,229,484 – 12,229,579 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.85 |
| Mean single sequence MFE | -22.45 |
| Consensus MFE | -14.56 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.650516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12229484 95 + 22224390 -------A----AAUGCCAGCC----------ACGCAUUCCAGCGAUUUAAUGACCCCAAAGUCGAGGCAACCAUUUUGCCAUCAUCGCAAAAAUCUCGUUAGGGAUAUUAGUCUC -------.----(((((.....----------..)))))...(((((.....(((......)))(((((((.....))))).)))))))....(((((....)))))......... ( -22.00) >DroSec_CAF1 52114 99 + 1 -------AAAGAAAUGCCAGCC----------ACGCAUUCCAGCGAUUUAAUGACCCCAAAGUCGAGGCAACCAUUUUGCCAUCAUCGCAAAAAUCUCGUUAGGGAUAUUAGUCUC -------...(.(((((.....----------..))))).).(((((.....(((......)))(((((((.....))))).)))))))....(((((....)))))......... ( -22.90) >DroSim_CAF1 52729 97 + 1 -------AAAGAAAUGCCAGCC----------ACGCAUUCCAGCGAUUUAAUGACC-CAAAGUCGAAGCAA-CAUUUUGCCAUCAUCGCAAAAAUCUCGUUAGGGAUAUUAGUCUC -------...(.(((((.....----------..))))).).(((((.....(((.-....)))((.((((-....))))..)))))))....(((((....)))))......... ( -18.20) >DroEre_CAF1 49510 106 + 1 AAACCAAAAAAAAAUGCCAGCC----------ACGCAUUCCAGCGAUUUAAUGACCCCACAGUCGAGGCAACCAUUUUGCCAUCAUCGCAAAAAUCUCGUUAGGGAUAUUAGUCUC ............(((((.....----------..)))))...(((((.....(((......)))(((((((.....))))).)))))))....(((((....)))))......... ( -22.00) >DroYak_CAF1 37035 99 + 1 -------AAAAAAAUGCCAGCC----------ACGCAUUCCAGCGCUUUAAUGACACCAAAGUCGAGGCAACCAUUUUGCCAUCAUCGCAAAAAUCUCGUUAGGGAUAUUAGUCUG -------.......((((....----------.(((......)))......((((......)))).))))....((((((.......))))))(((((....)))))......... ( -20.20) >DroAna_CAF1 66365 102 + 1 -------ACCCACAUCCCUCCCCGGUAACCUUACACAUGCCCAGGAUUUAAUGAUCC------UGUGGCAACCGU-UUGCCAUCAUCCCAGAAACCUCGUUUGGGAUAUUAGAUUC -------................(((((....((...(((((((((((....)))))------)).))))...))-)))))...((((((((.......))))))))......... ( -29.40) >consensus _______AAAAAAAUGCCAGCC__________ACGCAUUCCAGCGAUUUAAUGACCCCAAAGUCGAGGCAACCAUUUUGCCAUCAUCGCAAAAAUCUCGUUAGGGAUAUUAGUCUC ............(((((.................)))))...(((((....((((......)))).(((((.....)))))...)))))....(((((....)))))......... (-14.56 = -15.20 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:12 2006