Locus 4693

Sequence ID X_DroMel_CAF1
Location 12,224,476 – 12,224,579
Length 103
Max. P 0.980092
window7700

overview

Window 0

Location 12,224,476 – 12,224,579
Length 103
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 89.16
Mean single sequence MFE -32.69
Consensus MFE -28.98
Energy contribution -30.42
Covariance contribution 1.44
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.89
SVM decision value 1.85
SVM RNA-class probability 0.980092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12224476 103 + 22224390
GGGGUCGAAGGCAAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG
.........(((.........(((((((...............((((.....)))----------)((.....))..)))).)))....((((((((....))))))))))). ( -32.00)
>DroSec_CAF1 47298 103 + 1
GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG
.........((((((((((..(((((((...............((((.....)))----------)((.....))..)))).)))...((......))....)))))))))). ( -32.50)
>DroEre_CAF1 44671 103 + 1
GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGGCCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG
.........((((((((((...(((.(((.............(((((.....)))----------)).....)))..)))((((.........)))).....)))))))))). ( -34.17)
>DroYak_CAF1 31848 103 + 1
GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU----------GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG
.........((((((((((..(((((((...............((((.....)))----------)((.....))..)))).)))...((......))....)))))))))). ( -32.50)
>DroAna_CAF1 61129 104 + 1
-GAGACCGAGGAGAAGAG-------GGCAACAAUAAACAUUCCCAGCGACUGGCUGGUUCUUUCUGGCCAAGUGCAAGCUGACCGAAAGGAAAGGCCAAAAGGUU-UUCGCCG
-(((((((((.((((...-------(....)...........(((((.....))))))))))))(((((.(((....)))..((....))...)))))...))))-))..... ( -32.30)
>consensus
GGGGUCGAAGGCGAAGAACAACGGCAGCAACAAUAAACAUUCCCAGCGACUGGCU__________GGCCAAGUGCAAGCUGACCGAAAUGAAAGGCCAAAAGGUUUUUCGCCG
.........(((.........(((((((...(((....)))....(((..(((((((......)))))))..)))..)))).)))....((((((((....))))))))))). (-28.98 = -30.42 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:09 2006