| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,220,705 – 12,220,821 |
| Length | 116 |
| Max. P | 0.608728 |
| Location | 12,220,705 – 12,220,821 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.09 |
| Mean single sequence MFE | -23.72 |
| Consensus MFE | -11.86 |
| Energy contribution | -12.98 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12220705 116 + 22224390 AAUGCCUAGCAAUGAGAAGCUAAAAUACAAGUA----CAGUUGCUAGCCGUUAAGUAGUUAUAAAGCAUGUUGAACAGCAGUGAUGACAGUCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ......((((........)))).........((----((((((((.((((....(..(((((...((.((((....)))))).)))))...)....))))))))).)))))......... ( -28.80) >DroSec_CAF1 43546 98 + 1 AAUGCCUAGC------------------AAGUA----CAGUCGCUAGCCGAUAAGUAGUUAUAAAGCAUGUUGAACAACGUCGAUAACAGCCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ..(((...))------------------)..((----(((..(((.((((((..((.(((((...(.(((((....)))))).))))).))...)))))))))...)))))......... ( -26.20) >DroSim_CAF1 45368 98 + 1 AAUGCCUAGC------------------AAGUA----CAGUCGCUAGCCGAUAAGUAGUUAUAAAGCAUGUUGAACAACGUCGAUGACAGCCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ..(((...))------------------)..((----(((..(((.((((((..((.(((((...(.(((((....)))))).))))).))...)))))))))...)))))......... ( -26.30) >DroEre_CAF1 40808 105 + 1 AAAGC-----------GACCUAAAAUGCAAGUA----UAAUCGCUGGCCGAUAAGUAGUUAUAAAGCAUGUAGAACCACGUUGAUGACAGCAGAAUCGGCAGCAAUCUGAAAAUAUAAAC ...((-----------(........))).....----.....((((.(((((..((.(((((..(((.((......)).))).))))).))...)))))))))................. ( -19.80) >DroYak_CAF1 28345 115 + 1 AAAGCCUAGCAAUGAGCACCUAAAAUGCAAGUAUCUAUAAUCU-----CCAUAUGUAGUUAUAAAGCAUGUAGCACAACGUUGAUGACAGCAGAAUCGGUGGCAAUCUGUAAAUAUAAAU ...(((..((.....))(((....((((..(((.(((((....-----.....))))).)))...))))..........((((....))))......))))))................. ( -17.50) >consensus AAUGCCUAGC_______A_CUAAAAU_CAAGUA____CAGUCGCUAGCCGAUAAGUAGUUAUAAAGCAUGUUGAACAACGUUGAUGACAGCCGAAUCGGCAGCAAUCUGUAAAUAUAAAU ..........................................(((.((((((..((.(((((...(.(((((....)))))).))))).))...)))))))))................. (-11.86 = -12.98 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:08 2006