| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,215,745 – 12,215,847 |
| Length | 102 |
| Max. P | 0.686757 |
| Location | 12,215,745 – 12,215,847 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.85 |
| Mean single sequence MFE | -21.18 |
| Consensus MFE | -11.06 |
| Energy contribution | -11.06 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12215745 102 + 22224390 AAUAGUCCAUGGAUUAGCAUUAGCAAAAAGGUUGUCUAGAAAAAC----------------AAACAAAUCGAUCUAGUUAGCCGAUCGAUCGGUCGCGCCAUUAGGCGCGAGAAUCCA .........((((((..(...........(((((.(((((.....----------------...........))))).)))))((((....))))(((((....))))))..)))))) ( -30.39) >DroSec_CAF1 42461 106 + 1 AAUAGUCC-UGGAUUACCAUUAGCAAAAAGUUUGUCUAGAAAAACAACUAAUAUAGACAACAAACAAAUAUACCUACUUAGUCUUUUUA-----------AUAAGGCGCGAGAAUCCA ........-.(((((.......((.....(((.(((((...............))))))))...................(((((....-----------..)))))))...))))). ( -16.96) >DroSim_CAF1 44253 106 + 1 AAUAGUCC-UGGAUUAGCAUUAGCAAAAAGCUUGUCUAGAAAAACAACUAAUAUUGACAACAAACAAAUAUACCUACUUAGCCUUUUUA-----------AUAAGGCACGAGAAACCA .......(-(((((.(((...........))).)))))).....................................(((.(((((....-----------..)))))..)))...... ( -16.20) >consensus AAUAGUCC_UGGAUUAGCAUUAGCAAAAAGCUUGUCUAGAAAAACAACUAAUAU_GACAACAAACAAAUAUACCUACUUAGCCUUUUUA___________AUAAGGCGCGAGAAUCCA ..........(((((..(.(((((((.....))).)))).........................................(((((.................)))))..)..))))). (-11.06 = -11.06 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:07 2006