Locus 4690

Sequence ID X_DroMel_CAF1
Location 12,214,932 – 12,215,029
Length 97
Max. P 0.557444
window7697

overview

Window 7

Location 12,214,932 – 12,215,029
Length 97
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 85.33
Mean single sequence MFE -28.92
Consensus MFE -18.89
Energy contribution -20.20
Covariance contribution 1.31
Combinations/Pair 1.10
Mean z-score -1.65
Structure conservation index 0.65
SVM decision value 0.05
SVM RNA-class probability 0.557444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12214932 97 - 22224390
UGAAUUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUG-----GAUGGCCAUU-----------------GGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA
.......................(.((((((((..((((((((..((((..((-----(....)))..-----------------..))))...))))))))..)))))))).)..... ( -21.20)
>DroSec_CAF1 41647 115 - 1
----UUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUGGAUUGGAUGGCCAUUGGUUCGAUCAAAGUAUUGGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA
----.((((.(((((...((.((((.(((((((((...(((((((((((((..(..(((....))))..)))))).....)))))))...))))))))))))).)).)))))))))... ( -30.40)
>DroSim_CAF1 43434 119 - 1
UGAAUUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUGGAUUGGAUGGCCAUUGGUUCGAUCAAAGUAUUGGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA
..(((((...(((((...((.((((.(((((((((...(((((((((((((..(..(((....))))..)))))).....)))))))...))))))))))))).)).))))).))))). ( -31.20)
>DroYak_CAF1 26343 114 - 1
UGAAUUUUACACUGAAUGCGAAGCCAUUAAUCAAUGCUUCGAUACUCGGACUGG----GAUGGCCAUUGGUUUGG-CAAAGUUUUGGCUGAUUGAUUGAGGUUUUGGUUAAUUGAAUUA
.......................(.(((((((((.((((((((..((((.(..(----(((.((((......)))-)...))))..)))))...)))))))).))))))))).)..... ( -32.90)
>consensus
UGAAUUUUACAUUGAAUACGAAGCCAUUAAUCAAUGCCUCGAUACUCGGACUGG____GAUGGCCAUUGGUUCGA_CAAAGUAUUGGUUGAUUGAUUGAGGUUCUGGUUAAUUGAAUUA
.......................(.((((((((..((((((((....((.(((.......)))))......((((((((....))))))))...))))))))..)))))))).)..... (-18.89 = -20.20 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:06 2006