Locus 469

Sequence ID X_DroMel_CAF1
Location 1,384,811 – 1,384,905
Length 94
Max. P 0.991521
window718 window719

overview

Window 8

Location 1,384,811 – 1,384,905
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 98.58
Mean single sequence MFE -37.43
Consensus MFE -37.43
Energy contribution -37.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.11
Structure conservation index 1.00
SVM decision value 2.27
SVM RNA-class probability 0.991521
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1384811 94 + 22224390
UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAAAGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAGGCUCCGG
..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). ( -37.30)
>DroSec_CAF1 12221 94 + 1
UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAACGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAAGCUCCGG
..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). ( -37.50)
>DroSim_CAF1 11946 94 + 1
UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAACGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAAGCUCCGG
..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). ( -37.50)
>consensus
UGUGGAGCGGCAACUGUACUUGGAAACUAUGCCCAAUCCACGGACGGGCAAACGUCCGUCCGCCAAACGGUUUUUAAUCACCAGGAAGCUCCGG
..((((((((((...((........))..))))...(((.(((((((((....)))))))))......(((........))).))).)))))). (-37.43 = -37.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 1,384,811 – 1,384,905
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 98.58
Mean single sequence MFE -36.17
Consensus MFE -36.13
Energy contribution -36.13
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 1.00
SVM decision value 1.34
SVM RNA-class probability 0.944541
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1384811 94 - 22224390
CCGGAGCCUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACUUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA
..(((((.(((.(((........))).....((((((((.(....).)))))))))))...((((..((........))...)))))))))... ( -35.90)
>DroSec_CAF1 12221 94 - 1
CCGGAGCUUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACGUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA
..(((((.(((.(((........))).....((((((((........)))))))))))...((((..((........))...)))))))))... ( -36.30)
>DroSim_CAF1 11946 94 - 1
CCGGAGCUUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACGUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA
..(((((.(((.(((........))).....((((((((........)))))))))))...((((..((........))...)))))))))... ( -36.30)
>consensus
CCGGAGCUUCCUGGUGAUUAAAAACCGUUUGGCGGACGGACGUUUGCCCGUCCGUGGAUUGGGCAUAGUUUCCAAGUACAGUUGCCGCUCCACA
..(((((.(((.(((........))).....((((((((........)))))))))))...((((..((........))...)))))))))... (-36.13 = -36.13 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:17 2006