Locus 4686

Sequence ID X_DroMel_CAF1
Location 12,209,692 – 12,209,798
Length 106
Max. P 0.913899
window7691

overview

Window 1

Location 12,209,692 – 12,209,798
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.76
Mean single sequence MFE -39.42
Consensus MFE -21.20
Energy contribution -21.20
Covariance contribution 0.00
Combinations/Pair 1.21
Mean z-score -2.64
Structure conservation index 0.54
SVM decision value 1.09
SVM RNA-class probability 0.913899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12209692 106 - 22224390
CAGCCAUCGAUCGGAAGAUCAAACAGCUGCUAAGUGCCGGGGUAAUGGCCCACAUCGAAAGGAGGUACAUGCA------GUACGAGAACAAACGUAAGGUGGCUUCUAACGA---
.(((((((((((....)))).....(((((...(((((.((((....))))...((....)).)))))..)))------))(((........)))..)))))))........--- ( -41.40)
>DroSec_CAF1 36571 106 - 1
CAGCCAUCGAUCGGAAGAUCAAACAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGAGGUACAUGCA------GUACGAGAAGAAACAUAAGGUGGCUUCUAACGA---
.(((((((((((....)))).....(((((...(..((.((((....))))...((....)).))..)..)))------))................)))))))........--- ( -37.20)
>DroSim_CAF1 37949 106 - 1
CAGCCAUCGAUCGGAAGAUCAAACAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGAGGUACAUGCA------GUACGAGAAGAAACAUAAGGUGGCUUCUAACGA---
.(((((((((((....)))).....(((((...(..((.((((....))))...((....)).))..)..)))------))................)))))))........--- ( -37.20)
>DroEre_CAF1 34216 106 - 1
CAGCCGUCGAUCGCAAGAUCAAGCAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGCGGUACAUGCA------GUACGAGGACAAGCGGAGUGUGGCCUCCAACGA---
..((.(((((((....)))).....((((((((.((((....(((((.....)))))...)))).).)).)))------)).....)))..))((((......)))).....--- ( -39.90)
>DroYak_CAF1 20879 106 - 1
CAGCCGUCGAUCGCAAGAUCAAACAGCUGCUGAGCGCCGGUGUGAUGGCCCACAUCGAGAGGCGGUAUAUGCA------GUACGAGGGCAAACAGCAAUUGGCUUCUAAUGA---
..(((.((((((....)))).....(((((..(.((((....(((((.....)))))...)))).)....)))------))..)).)))....(((.....)))........--- ( -39.50)
>DroPer_CAF1 1770 106 - 1
ACGCCUUCGACCGCAAGAUCAAACAGCUGCUCAGCUCCGGCGUAGUGUCGCAUAUCGAGCGCCGGUACUUGCGACUGUGCUACGCCGACA---------UGGCAGCCAAAGACAG
........((.(....).)).....(((((.((....((((((((((((((((((((.....)))))..))))))...)))))))))...---------)))))))......... ( -41.30)
>consensus
CAGCCAUCGAUCGCAAGAUCAAACAGCUGCUGAGCGCCGGGGUGAUGGCCCACAUCGAAAGGAGGUACAUGCA______GUACGAGAACAAACAUAAGGUGGCUUCUAACGA___
..((((..((((....)))).......(((...(..((.(((......)))...((....)).))..)..)))..........................))))............ (-21.20 = -21.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:00 2006