| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,209,346 – 12,209,466 |
| Length | 120 |
| Max. P | 0.624138 |
| Location | 12,209,346 – 12,209,466 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.56 |
| Mean single sequence MFE | -29.30 |
| Consensus MFE | -22.93 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624138 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12209346 120 + 22224390 CAGUAGGAACAUCUGGCUGAUUUGUGGUUCGUUUCCUCCGAAGAUUAACAAAUUAGCAAGAGGGAUAUUUGGCCAUUAACGAACUGACUACUAGCUACAUUAGCGAACUAGCUUUAAAAA .(((((...(.(((.((((((((((..((((.......)))).....)))))))))).))).)....((((........))))....))))).((((...))))................ ( -24.50) >DroSec_CAF1 36179 120 + 1 CAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUCGUUGGCCAUUAACGAACUGGCUACUAGCUACAUUACAAAUCUAGCUUUAAAAA .(((((.....(((.((((((((((...(((((......)))))...)))))))))).))).((.((((((.....)))))).))..)))))(((((.((.....)).)))))....... ( -34.00) >DroSim_CAF1 37577 96 + 1 CAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUGGUUGGCCAUUAACGAACUG------------------------GCUCUAAAAA ((((.....(.(((.((((((((((...(((((......)))))...)))))))))).))).)(((((....))))).....))))------------------------.......... ( -29.40) >consensus CAGUAGGAACAUCUGGCUGAUUUGUGGUUCCUUCACUCCGAGGAUUAACAAAUUAGCAAGAGGGGUAGUUGGCCAUUAACGAACUG_CUACUAGCUACAUUA___A_CUAGCUUUAAAAA ((((.......(((.((((((((((...(((((......)))))...)))))))))).))).((........))........)))).................................. (-22.93 = -23.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:00 2006