Locus 4682

Sequence ID X_DroMel_CAF1
Location 12,201,197 – 12,201,305
Length 108
Max. P 0.982585
window7680

overview

Window 0

Location 12,201,197 – 12,201,305
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.11
Mean single sequence MFE -27.80
Consensus MFE -25.88
Energy contribution -26.72
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.93
SVM decision value 1.92
SVM RNA-class probability 0.982585
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12201197 108 - 22224390
GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------
((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40)
>DroSec_CAF1 27508 108 - 1
GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------
((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40)
>DroSim_CAF1 28692 108 - 1
GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------
((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40)
>DroEre_CAF1 26693 108 - 1
GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU------------
((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.40)
>DroYak_CAF1 12344 108 - 1
GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCUGGGCCU------------
((((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).))))))------------ ( -28.70)
>DroAna_CAF1 41507 116 - 1
CGGCCGCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCG----CAGGGCCUCCUACCAACCCC
.((((((..((((....)))).))((((((((((..(((((....)))))....))))))))))((((((((.....(((.....)))..)))).)----)))))))............. ( -24.50)
>consensus
GGGCCUCCUGUCGUCUGCGGCUGUAAAUGAAGUUGUGUUUUAAUUAAAAUUCCAGACUUUAUUUCUGUAAUUAUAUUAACUCGCUGUUCGAAUUCGUUUGCCGGGCCU____________
.(((((...((((....)))).(((((((((...(((..(((((...((((.((((.......)))).))))..)))))..)))........))))))))).)))))............. (-25.88 = -26.72 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:51 2006