Locus 4679

Sequence ID X_DroMel_CAF1
Location 12,198,230 – 12,198,346
Length 116
Max. P 0.854925
window7677

overview

Window 7

Location 12,198,230 – 12,198,346
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -32.72
Consensus MFE -27.78
Energy contribution -27.70
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -2.00
Structure conservation index 0.85
SVM decision value 0.80
SVM RNA-class probability 0.854925
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12198230 116 - 22224390
UUUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC
...........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90)
>DroSec_CAF1 24572 115 - 1
-UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC
-..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90)
>DroSim_CAF1 25794 115 - 1
-UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC
-..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90)
>DroEre_CAF1 24015 115 - 1
-UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC
-..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90)
>DroYak_CAF1 9435 115 - 1
-UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA---UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA-GGCGCCAC
-..........(((((((((...)))))))))(((((((....))))).....(((.---....((((...((((((.(((((...))))).)))))).......))))..-)))))... ( -30.90)
>DroAna_CAF1 36443 116 - 1
-UACCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCUGUUGUUGGUGUUGC---UGGCAUUUUUUUGCUAUUAGUUGGUUGCCAGCAGAUGGCCAUUAACGUCCAUUUAGCCGGGGCGCCAC
-..((((...((((((((((...))))))))))..((((.((((.((((---(((((.......((((.....)))))))))))))...)))).))))............))))...... ( -41.81)
>consensus
_UUCCCCUUUCGGCGAUAAUUUUAUUAUUGCCGCCAAUGUUGCCGUUGUAUUUGCCA___UUUUGCUAUUAGUUGGUUGCCAGCAGCUGGCCAUUAACGUCCAUUUAGCCA_GGCGCCAC
...........(((((((((...)))))))))(((((((....)))).................((((...((((((.(((((...))))).)))))).......))))...)))..... (-27.78 = -27.70 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:48 2006