Locus 4675

Sequence ID X_DroMel_CAF1
Location 12,193,887 – 12,193,994
Length 107
Max. P 0.992739
window7669

overview

Window 9

Location 12,193,887 – 12,193,994
Length 107
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 89.71
Mean single sequence MFE -32.80
Consensus MFE -26.62
Energy contribution -26.82
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.56
Structure conservation index 0.81
SVM decision value 2.35
SVM RNA-class probability 0.992739
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12193887 107 + 22224390
UGCUGGGAAACAAUGUGCCGUGCCAAACUGAACGGGACAAAGGCGC------AAAAACAAAGGCAAAACG------AGUGCGGUUGUCUGGCCAAAAAAUGGGAUGGCAAAAAUUUGCA
.((..(....)....((((((.(((.......(.((((((..((((------..................------.))))..)))))).)........))).)))))).......)). ( -29.37)
>DroSec_CAF1 20260 107 + 1
UGCUGGGAAACAAUGUGCCGUGCCAAACUGAACGGGACAAAGGCGC------AAAAACAAAGGCAAAACG------AGUGCGGUUGUCUGGCCAAAAAAUGGGAUGGCAAAAAUUCGCA
.((..(....)....((((((.(((.......(.((((((..((((------..................------.))))..)))))).)........))).)))))).......)). ( -29.67)
>DroSim_CAF1 21454 107 + 1
UGCUGGGAAACAAUGUGCCGUGCCAAACUGAACGGGACAAAGGCGC------AAAAACAAAGGCAAAACG------AGUGCGGUUGUCUGGCCAAAAAAUGGGAUGGCAAAAAUUUGCA
.((..(....)....((((((.(((.......(.((((((..((((------..................------.))))..)))))).)........))).)))))).......)). ( -29.37)
>DroEre_CAF1 19684 106 + 1
UGCUGGGAAACAAUGUGCCGUGCCAAGCUGAACGGCACAAAGGCGC------AAAAACAAAGGCGAAACG------AGUGCGGUUGUCUGGCCAAAAGAUGGGAUGGCAA-UGCUCGCA
.(((.(....)..(((((((((((.........)))))...)))))------)........)))....((------((((..((..(((.(.(....).).)))..))..-)))))).. ( -34.70)
>DroYak_CAF1 4805 119 + 1
GGCUGGGCAACAAUGUGCCGUGCCAAACUGCACGGGACAAAGGCGCAAUAGCAAAAACAAAGGCACAAUGAAAAGCAGUGCGGUUGUCUGGCCAAAAAAUGGGAUGGCAAAUUUACGCA
(((..((((((..(((.((((((......)))))).)))...((......))..........((((..(....)...)))).))))))..))).............((........)). ( -40.90)
>consensus
UGCUGGGAAACAAUGUGCCGUGCCAAACUGAACGGGACAAAGGCGC______AAAAACAAAGGCAAAACG______AGUGCGGUUGUCUGGCCAAAAAAUGGGAUGGCAAAAAUUCGCA
.((..(....)....((((((.(((.......(.((((((..((((...............................))))..)))))).)........))).)))))).......)). (-26.62 = -26.82 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:40 2006