| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,193,577 – 12,193,684 |
| Length | 107 |
| Max. P | 0.638339 |
| Location | 12,193,577 – 12,193,684 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 94.21 |
| Mean single sequence MFE | -23.48 |
| Consensus MFE | -18.48 |
| Energy contribution | -18.04 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12193577 107 + 22224390 UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCAAAGGACGAGUGACAUUUUGUGCCCAAAGUGGCGGACCAAACUCGUCCUUCUUC ...(((..........))).....((((((((((......))))))))))....((((((((((.......(.((((......)))).)....)))))))))).... ( -23.90) >DroSec_CAF1 19950 107 + 1 UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGGACGAAUGACAUUUUGUGCCCAAAGUGGCGGACCAACCUCGUCCUUCUUC .................(((((((((((((((((......))))))))))......(((((((......))))).))..)))))))((((.......))))...... ( -22.30) >DroSim_CAF1 21150 107 + 1 UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAACCCACAGGACGAGUGACAUUUUGUGCCCAAAGUGGCGGACCAACCUCGUCCUUCUUC .................(((((((.(((((((((......))))))))).......(((((((......))))).))..)))))))((((.......))))...... ( -21.70) >DroEre_CAF1 19402 107 + 1 UAUGCAAAUUCCAUGCGGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGCACGAGUGACAUUUUGUGCCCAAAGUGGUCGCCCAUCCUCGUCCUUCCUC ..............((((((((((((((((((((......))))))))))......(((((((......)))))))...)))))))))).................. ( -26.70) >DroYak_CAF1 4474 107 + 1 UAUGCAAAUUCCAUGCUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGGACGAGUGACAUUUUGUGCCCAAAGUGGUCGACCAUCCUCGUCCUUCUUC ...(((.......)))........((((((((((......)))))))))).....((((((((((((((((((....)))))).))))......))))))))..... ( -22.80) >consensus UAUGCAAAUUCUAUACUGCCAUUUAUUUGAUGAUUUUCGCAUUAUUAAAUCCCACAGGACGAGUGACAUUUUGUGCCCAAAGUGGCGGACCAACCUCGUCCUUCUUC ...............(((((((((.(((((((((......))))))))).......(.(((((......))))).)...)))))))))................... (-18.48 = -18.04 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:38 2006