Locus 467

Sequence ID X_DroMel_CAF1
Location 1,374,334 – 1,374,442
Length 108
Max. P 0.972980
window714 window715

overview

Window 4

Location 1,374,334 – 1,374,442
Length 108
Sequences 3
Columns 110
Reading direction forward
Mean pairwise identity 94.55
Mean single sequence MFE -36.60
Consensus MFE -34.09
Energy contribution -34.10
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -2.80
Structure conservation index 0.93
SVM decision value 1.70
SVM RNA-class probability 0.972980
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1374334 108 + 22224390
UUCCUGCUGGUAUCCUGCUGGCCGCCACGAGAAAACUGGUGGCUCAGAAUCCUAAGUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUUAAGGAACCAG--CUAAUUAG
.....((((((.((((.((((((((((.(......)))))))).)))..(((........))).......(((((..........))))).)))))))))--)....... ( -35.80)
>DroSec_CAF1 6370 110 + 1
UUCCUGCUGGUAUCCUGUUGGCCGCCACGAGAAAACUGGUUGCCCAGAAUCCUAACUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUCAAGGAACCAGCGCUGAUUAG
.....((((((.((((...(((.((((.(......))))).)))..((((((........)))....)))(((((..........))))).))))))))))......... ( -32.50)
>DroSim_CAF1 7101 110 + 1
UUCCUGCUGGUAUCCUGUUGGCCGCCACGAGGAAACUGGUGGCCCAGAAUCCUAAGUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUCAAGGAACCAGCGCUGAUUAG
.....((((((.((((.((((..(((((.((....)).)))))))))..(((........))).......(((((..........))))).))))))))))......... ( -41.50)
>consensus
UUCCUGCUGGUAUCCUGUUGGCCGCCACGAGAAAACUGGUGGCCCAGAAUCCUAAGUCUUGGACAAAUUCGAAGCUAAUAAAAGUGCUUCAAGGAACCAGCGCUGAUUAG
.....((((((.((((.((((..(((((.((....)).)))))))))..(((........))).......(((((..........))))).))))))))))......... (-34.09 = -34.10 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 1,374,334 – 1,374,442
Length 108
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 94.55
Mean single sequence MFE -34.27
Consensus MFE -29.19
Energy contribution -29.97
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -1.99
Structure conservation index 0.85
SVM decision value 0.07
SVM RNA-class probability 0.568933
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1374334 108 - 22224390
CUAAUUAG--CUGGUUCCUUAAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGACUUAGGAUUCUGAGCCACCAGUUUUCUCGUGGCGGCCAGCAGGAUACCAGCAGGAA
.......(--(((((((((..((((..........))))..)....((((........)))).(((.(((.((((......).))).))))))..))).))))))..... ( -30.40)
>DroSec_CAF1 6370 110 - 1
CUAAUCAGCGCUGGUUCCUUGAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGAGUUAGGAUUCUGGGCAACCAGUUUUCUCGUGGCGGCCAACAGGAUACCAGCAGGAA
.........((((((((((((((((..........)))))))..(((.(((.(((....((..((((....))))..))))).))))))......))).))))))..... ( -36.10)
>DroSim_CAF1 7101 110 - 1
CUAAUCAGCGCUGGUUCCUUGAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGACUUAGGAUUCUGGGCCACCAGUUUCCUCGUGGCGGCCAACAGGAUACCAGCAGGAA
.........((((((((((((((((..........)))))))..(((.((...((..((((..((((....))))..)))).))...)).)))..))).))))))..... ( -36.30)
>consensus
CUAAUCAGCGCUGGUUCCUUGAAGCACUUUUAUUAGCUUCGAAUUUGUCCAAGACUUAGGAUUCUGGGCCACCAGUUUUCUCGUGGCGGCCAACAGGAUACCAGCAGGAA
.........((((((((((((((((..........)))))))..(((.(((......((((..((((....))))..))))..))))))......))).))))))..... (-29.19 = -29.97 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:14 2006