| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,189,414 – 12,189,525 |
| Length | 111 |
| Max. P | 0.964999 |
| Location | 12,189,414 – 12,189,525 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 75.07 |
| Mean single sequence MFE | -38.10 |
| Consensus MFE | -25.58 |
| Energy contribution | -24.70 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12189414 111 - 22224390 GAGUUCCACUUCAAAGUGCUUGGGGUUUGUCAUUAAAAGUGACAGCCCGCAGCAGCUUUAGCA-ACUCCUAUGGCUUCGG-GUCUCUAGUUGAAGUCCUGGGAGUGGUGUGAC ..((..((((..((((((((.((((((.(((((.....)))))))))).))))).))))....-(((((((.((((((((-.(....).)))))))).)))))))))))..)) ( -42.80) >DroSec_CAF1 15748 113 - 1 GAGUUCCACUUCAAAGUGCUGGGGGUUUGUCAUUAAAAGUGACAGCCCGCAGCAGCUUUAGCAAACUCCUAUGGCUUCGGGGGCUCUAGCUGAAGUCCUGGUAGCAGUGUGAC ..((..((((..(((((((((.(((((.(((((.....)))))))))).))))).))))..............(((.(.(((((((.....).)))))).).)))))))..)) ( -43.90) >DroEre_CAF1 15677 93 - 1 AGAUUCCA-UUCGUAGUGCUUAGGGUUUGUCAUUAGAGGCGACAACCCGCAGCAGCUGCAGCA-ACUCCUUCGGCUGCGG-GAC-AUAGUUGAGGUC---------------- .(((..((-.......((((..(((((((((......)))))..))))..)))).(((((((.-.........)))))))-...-.....))..)))---------------- ( -27.60) >consensus GAGUUCCACUUCAAAGUGCUUGGGGUUUGUCAUUAAAAGUGACAGCCCGCAGCAGCUUUAGCA_ACUCCUAUGGCUUCGG_GACUCUAGUUGAAGUCCUGG_AG__GUGUGAC ............((((((((..(((((.(((((.....))))))))))..)))).)))).............((((((((.........))))))))................ (-25.58 = -24.70 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:33 2006