| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 12,188,441 – 12,188,552 |
| Length | 111 |
| Max. P | 0.796914 |
| Location | 12,188,441 – 12,188,552 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.64 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -13.33 |
| Energy contribution | -15.00 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 12188441 111 + 22224390 CCUUCCACACGAUCCGCCAGUCCGCC---CCCCUCCACUCCACAUUUCUUCGGAUUUUCCACUUUCCUGGACCCCAGGUC------UCGGACUUGGAUGGCCCAUUCCACGUUUAUUUUU ........((((((((..((((((..---.................((....))...........(((((...)))))..------.)))))))))))((......)).)))........ ( -22.60) >DroSec_CAF1 14772 105 + 1 CCUUCCACACGGUCCGCCAGUCCGUCCGCCCCCUCCACACC--AUUUCUUCGGAUUUUCCACUUUCCUGGACCCCAGGUC------UCGGACUUGGAUGGCCCACCCCACGUU------- ..........(((..((((.((((((((.............--...((....))...........(((((...)))))..------.)))))..)))))))..))).......------- ( -27.30) >DroEre_CAF1 14746 94 + 1 CCACCCAG--------------CUCC---CUGCGCCACUCG--AUUUCUUGGGAUUUUCCACUUUCCUGGACGCCAGGUCUCGGUCUCGGACUUGGUUGGCCCACCCCUCGUU------- .......(--------------(...---..))((((((((--(....)))))....((((......)))).((((((((.((....))))))))))))))............------- ( -24.80) >consensus CCUUCCACACG_UCCGCCAGUCCGCC___CCCCUCCACUCC__AUUUCUUCGGAUUUUCCACUUUCCUGGACCCCAGGUC______UCGGACUUGGAUGGCCCACCCCACGUU_______ ((.((((...........(((((............................((.....)).....(((((...)))))..........))))))))).)).................... (-13.33 = -15.00 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:28 2006