Locus 4661

Sequence ID X_DroMel_CAF1
Location 12,179,749 – 12,179,854
Length 105
Max. P 0.744540
window7648

overview

Window 8

Location 12,179,749 – 12,179,854
Length 105
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 90.54
Mean single sequence MFE -28.10
Consensus MFE -21.90
Energy contribution -23.40
Covariance contribution 1.50
Combinations/Pair 1.19
Mean z-score -1.84
Structure conservation index 0.78
SVM decision value 0.46
SVM RNA-class probability 0.744540
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12179749 105 + 22224390
AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUAGGCG--AGGCGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUGGCACUUUAAACAGCUUAGGUC-AGAUA
........................(((((((((.(..(--(((.((...........((....))((((......))))..)).))))...).)))))))))-..... ( -22.20)
>DroSec_CAF1 6265 108 + 1
AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUGGGCCAAAGACGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUAGCACUUUAAACUGCUUAGGUCCAGAUU
......................((((((((((..(...((((...............((....))((((......)))).....))))...)..)))))))))).... ( -27.80)
>DroSim_CAF1 9174 108 + 1
AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUGGGCGAGAGGCGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUGGCACUUUAAACUGCUUAGGUCCAAAUU
......................((((((((((..(...((((((.............((....))((((......))))..)).))))...)..)))))))))).... ( -32.00)
>DroEre_CAF1 6695 104 + 1
AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGCAGUCG--AGGCGUAAUUGAAAACCCGAUUUCCCC-GGGGCAACAGGUGGCACUUUAAGCUGCUUGGGUC-GAAUA
........................((((..((((((.(--(((.((..(((....((((.......)-)))....)))...)).))))..))))))..))))-..... ( -30.40)
>consensus
AAAAGUGUGUGAAAUAAAAAGAUGGAUCUGAGUAGGCG__AGGCGUAAUUGAAAAACGGAUUUCCCCUGGGGCAACAGGUGGCACUUUAAACUGCUUAGGUC_AAAUA
......................(((((((((((((...((((((......((((......)))).((((......))))..)).))))...))))))))))))).... (-21.90 = -23.40 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:21 2006