| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,368,079 – 1,368,199 |
| Length | 120 |
| Max. P | 0.930527 |
| Location | 1,368,079 – 1,368,199 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -26.42 |
| Consensus MFE | -25.41 |
| Energy contribution | -26.07 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.930527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1368079 120 + 22224390 CUUCUUCAGCUCUGCCUCCGUUUUCCCUUUCCUUGCUUUCUCUUUCCUUGACUGCCCCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCC ..((((((((.(((((((((..............((..((.........))..))..))))))))).))...((......))(((......)))........))).)))........... ( -23.39) >DroSec_CAF1 504 120 + 1 CUUCUUCAGCGCUGCCUCCGACUUCCCUUCCCUUGCCUUCUCUUUCCUUGACUGCCUCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCU ..(((((((((((((((((((.............((..((.........))..)).)))))))))))))...((......))(((......)))........))).)))........... ( -27.94) >DroSim_CAF1 534 120 + 1 CUUCUUCAGCGCUGCCUCCGACUUCCCUUCCCUUGCCUUCUCUUUCCUUGACUGCCUCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCU ..(((((((((((((((((((.............((..((.........))..)).)))))))))))))...((......))(((......)))........))).)))........... ( -27.94) >consensus CUUCUUCAGCGCUGCCUCCGACUUCCCUUCCCUUGCCUUCUCUUUCCUUGACUGCCUCGGGGGUAGUGCUCCGGUUAAAUCCGCAUACACUUGCCACAAACAUGACAGACUUCAAUCCCU ..(((((((((((((((((((.............((..((.........))..)).)))))))))))))...((......))(((......)))........))).)))........... (-25.41 = -26.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:12 2006