Locus 4658

Sequence ID X_DroMel_CAF1
Location 12,177,767 – 12,177,887
Length 120
Max. P 0.973755
window7645

overview

Window 5

Location 12,177,767 – 12,177,887
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -39.42
Consensus MFE -37.45
Energy contribution -38.12
Covariance contribution 0.67
Combinations/Pair 1.12
Mean z-score -2.55
Structure conservation index 0.95
SVM decision value 1.72
SVM RNA-class probability 0.973755
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 12177767 120 + 22224390
CGUGCUGGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCUGGCGGCAUUUAGGUGUAUAAUAUGCCACGUGCACUGGCA
..(((..((((..............(((((((((.............)))))..))))((...((((((((....)))))))).((((((((......))).))))).)).))))..))) ( -41.12)
>DroEre_CAF1 4847 120 + 1
CGUGCCGGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCUGCCGGCAUUUAGGUGUAUAAUAUGCCACGUGCAUCGGCA
..(((((((((..............(((((((((.............)))))..))))((....(((((((....)))))))..((((((((......))).))))).)).))))))))) ( -42.02)
>DroAna_CAF1 13288 116 + 1
CGUGCUAGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCCGCCGGCAUUUAGUUCUAUAAUAUGCCACGUGCACA----
.((((..(.((..............(((((((((.............)))))..)))).......((((((....)))))))))((((((((......))).)))))....)))).---- ( -35.12)
>consensus
CGUGCUGGUGCCUCAAGUUCAUUAUGUCUGGCCAUAUAAAUUUCACUUGGCCACAGACCGAAAUCGGAGUCAAAUGGCUCUGCCGGCAUUUAGGUGUAUAAUAUGCCACGUGCACAGGCA
...((((((((..............(((((((((.............)))))..))))((....(((((((....)))))))..((((((((......))).))))).)).)))))))). (-37.45 = -38.12 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:18 2006